Ciona intestinalis (yellow sea squirt): 100175032
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Entry
100175032 CDS
T01056
Name
(RefSeq) structural maintenance of chromosomes protein 6
KO
K22804
structural maintenance of chromosomes protein 6
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100175032
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
100175032
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_29
ABC_tran
DUF1843
Cast
Motif
Other DBs
NCBI-GeneID:
100175032
NCBI-ProteinID:
XP_002122639
Ensembl:
ENSCING00000021570
LinkDB
All DBs
Position
12:complement(408870..412623)
Genome browser
AA seq
1072 aa
AA seq
DB search
MTSKRKNTEVISALASKRSCTDEEIDFNPKNKKSVWGILESISLRNFMCHTRLSMRFSGG
VNFIVGHNGSGKSAVLTAIVIALGGKASSTSRGTSLKTLIKTGTSSAVVEITLRNNGDES
VKPEVYGPKITVERRISADGQSQYKIKSSTGKVVSTKKEDLLTILDEINLHVDNPLTCLN
QEMSKNFLHSKNESDKYKFFLKSTQLDQMSRDYRFIKQQQITMKSVLKQKEKAIPDLKKD
VLEKERRFKDLASLQELKAKVEDFKGELAWAHVVQLEHSLKPTKRDLDKEKARTVKYDAA
LKKCAENETGAQAKFESLQKLAKEYQEQIKSKEPGRHKAKKLYDETKVSCKAVENNLARA
VRSKREVAKDKREMEMRIQELKNSSKVDTEGKKQEREEKCAQLNERVQQLQAQLKTVSHD
IEQYSHAMNQSREQISTLKSEEANQQQEHRKLKQTLNNLVAGKKNKLQLFGPKMPEFVKR
IEDAFMKKKFRHKPRGPIGSCLTLKDQSLAVPVEAAIKSYLHAFVVENHNDEKILMSIRN
SVFAPHERARIAIYTMKFSNQVYNVSHGRVVHPLFSSVLDLLVINDPVVANCLIDLGGIE
TILVIPENKDALSTIQHYAPPKNCTKAYTKLGDEVFTDRWYSNRDSTSRFLRADVEEEVR
KNENMLKSLVEELNEKKRLGHQLEQDRSRNEREFKSSQQRRHKINDNLKKLKVEIRKLEA
IEDPQPIDVRDLEDEVNNYTQQLTSLDSVIEEHTQQSQQYSEGKMKAKQECDEISNRIRQ
IAEKAEELKEQIDNVLAEIDKAKSERKHYEEGKVNHLSTIKALEMELAAQQSKVEVETKK
ARIICKDRIETRRAPNNIENEIRQIHRRIEAEESKRGDHATVVREFNEARQQFTEIKQKI
KWSKKFLGEIDNYLDKRQFAFNQMRSLISMRCTMDFNVLLNQRGFKGKMVFKHEEQMLYI
SVKPHDTASLTDDLRALSGGERSFSTVCYILALWQAIQSPIRCLDEFDVFMDMANRRVAM
DMMVEMALLQKKRQFIFLTPHDISALPKSPEIHVWKMADPDRAQTTLPFERN
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaaaaaggaaaaacacagaagtaatttctgctttggcatccaaacgtagttgc
acggatgaagagatagattttaacccaaagaataagaagagtgtttggggcatccttgaa
agtatatcgcttagaaactttatgtgtcatactcgtttatcaatgaggttttctggcggg
gttaatttcattgttggtcataacggcagcgggaaaagtgcagttttgacagcaattgtc
atcgctttgggtgggaaagcgagcagtacaagtcgtggtacttctttaaagacgttaatt
aaaacaggaaccagctcggcggtggttgaaattactttgcgaaacaatggagatgaatct
gtgaaaccagaggtttatggaccgaaaatcactgtggaacggaggatctctgcagatggt
caatcacaatataaaattaaaagttcaactggaaaagtggtttccacgaaaaaggaagac
ttattgacgatactggatgaaataaacttacacgttgataacccattgacgtgcttaaac
caggaaatgagtaaaaactttctgcactcgaaaaatgagtcagacaaatataaattcttc
ttgaagtcgacccagttggatcaaatgagccgcgattatcggtttattaaacagcagcaa
ataactatgaaaagtgttttaaagcaaaaagaaaaagcaattccagatttgaaaaaagat
gttctggaaaaggaaagaaggtttaaggatcttgcaagtttacaggaactgaaagcaaaa
gtggaggattttaaaggagagcttgcctgggcccatgtggtgcagttagaacattctttg
aaaccaacgaaaagagacttggataaagaaaaggcgagaactgtgaagtatgacgctgcg
ctgaaaaaatgcgctgaaaatgagactggtgctcaagccaagtttgaaagtttacaaaag
ttggcaaaggaatatcaggaacaaattaaatccaaggaacccggtcggcataaagcaaag
aaactgtatgatgagacgaaagttagctgcaaagctgtggaaaataatttggctagagct
gttcgttccaaaagggaagttgccaaagataagcgggaaatggagatgaggattcaggaa
cttaaaaactcctctaaagttgatactgaaggtaaaaagcaggagagagaagaaaaatgt
gcacaactgaatgaaagagtgcagcagctgcaagcgcagttgaagacagtgagtcacgat
attgaacaatacagtcacgctatgaatcaaagcagagaacagatttcaacgctgaaatct
gaagaagctaatcagcaacaagagcatcggaaactaaaacaaactttaaataacctggtt
gctgggaaaaagaacaagttgcagctatttggaccaaaaatgccggaattcgttaaaagg
attgaagatgctttcatgaaaaagaagtttcgacataaaccgaggggtccaatcggaagc
tgcctaacactgaaggaccaatcgcttgctgtgcctgtagaagcagccataaagtcctac
ttgcatgcatttgtggtggagaatcataatgatgaaaaaattctcatgtcaatcaggaat
tctgtgtttgctcctcatgaaagagctagaattgcgatttacacgatgaagttttcaaac
caggtgtacaatgtttcccatggtcgggtagttcatcctttgttctcatctgttctcgac
ctgctggttataaatgatccagtagtggcgaactgtctcattgatttaggtggaatcgag
acaatattggtgatccccgagaataaagacgcattgtccaccatacaacattatgctcca
ccgaagaactgcacaaaggcgtacacaaagcttggtgatgaggttttcaccgatcgttgg
tattcaaacagagattccacctctcgcttcctgagagcagatgttgaagaggaagttcgg
aaaaatgaaaatatgttgaagagcttagtagaagagctgaacgaaaagaagaggcttgga
catcaattggaacaagatcgaagcaggaatgaacgggagtttaaatcaagtcagcaacga
cgtcataaaattaacgacaatttgaaaaagttaaaagttgagattcggaaactagaagca
attgaagacccacaaccaatagatgttcgtgacttggaagatgaagtgaataactataca
cagcaacttacttcactggattctgtgattgaagaacacacgcaacagagtcagcaatac
agtgagggcaagatgaaagcaaagcaagaatgcgatgaaatttcaaaccggatacgacaa
atcgcggaaaaagctgaagaacttaaggaacagatagacaacgtactagctgaaattgac
aaagcaaaatcagagcgaaaacattatgaagaaggaaaagtaaaccatttatcgaccatt
aaagccctggaaatggagcttgctgctcagcagagtaaagttgaagttgaaaccaagaaa
gcaaggattatctgcaaagacagaatcgaaacacgacgcgcccctaacaacattgaaaac
gagattcgacaaattcatcgaaggattgaagctgaagaaagcaagaggggtgatcatgct
actgttgtgagggaatttaatgaagccagacaacagtttactgaaatcaagcagaaaatt
aagtggtccaaaaagtttttaggtgaaattgataactaccttgataaaaggcagtttgct
tttaaccaaatgaggtctcttatatctatgaggtgtactatggattttaatgttcttcta
aaccaaagggggttcaaggggaaaatggttttcaagcacgaggaacaaatgctgtatata
tcggtgaaaccacacgatacagcttcattaacggatgacctgcgtgcattatctgggggg
gaacgctctttctcaactgtatgttatattcttgcactgtggcaagcaatacagtcacct
ataaggtgcttggatgagtttgatgtgttcatggatatggcaaaccggcgtgttgccatg
gacatgatggtagaaatggcactgctgcaaaagaaacgacaattcatatttttgactccc
catgatataagtgctttgccaaaatcgccagaaattcatgtttggaaaatggcggaccca
gacagagctcaaactacccttccatttgaaagaaattaa
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