Ciona intestinalis (yellow sea squirt): 100175215
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Entry
100175215 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase TTC3-like
KO
K15712
E3 ubiquitin-protein ligase TTC3 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100175215
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100175215
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100175215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TTC3_DZIP3_dom
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_16
zf-C3HC4_3
zf-RING_5
zf-RING_14
Vps54_N
Motif
Other DBs
NCBI-GeneID:
100175215
NCBI-ProteinID:
XP_018672527
LinkDB
All DBs
Position
Unknown
AA seq
1349 aa
AA seq
DB search
MLSVGSQISMTAPEKFVLYYVRGSASLETRLPGEIRSSINYFNFICGNERPVATFNHPMA
LYAKAHALYLLNNFTVSGEALQQANHVINRSQFRGFLTYPGTDQVIPESSLSKLSQLMKQ
LASLLRHPPSPIAVCRYDDCYKENKRKEIYSTDFNFEGFVQVSCHWKCVICFHIKCWTKL
RNETYEKKRDKDVFTQPCVTDGCRGQIYKISIIDEFEQIKKHKWEGNLIDERVAKQHVKQ
SKNDRNFIKRRKSMKEAKERKLKWRESNRVEELPEENKEPEVLKEIPENKPLKVITEQDI
LNAQVLRKDEKEIETTTKTVKNKKNKQKKKGAVSLRDFLGGGNITSEQAFEISENEKLLM
DIYSYFEDFFSHNGPMHVTNALLIQQIFHLPNNMRSCVYQHNGIISFLKMNPRKFCLVRS
YIGLLRHEEQLFKLADIDDELLAAQESKLLAENMMLDSLDTFGGNSDFARDLYQVGDIPL
DKIVDITGIPPSENPPQSNKTGVSPPDYSDTESQPVLNEAGPPPNRLLSWTKLSDDQFMA
KQKAVGESSPYVSNPTGNLPFTDANVEKVSNRNPPGLTLPARIPPAGNPPVVKSPAGNPP
VVKSPAGNPPVVKSPAGNPPVVKSPAGNPPVVKSSAGNPPVVKSPAGNPPVVKSPAGNPP
VVKSPAGNPPVVKSPAGNPPVVKSPAGNPPVVKSPAGNSPVGKSPAGNPPVVKLPAENFP
VVKSPAGNPPVVSDNSLSNKMDEYLGSSIPQTSGALSIDGVTISPPPNLPTSGGINATKL
LDPSSGTQPPQDDPNIIKAFNLSGGRGLFQDTININTSDVAPVPDDANLPFKRDGNTKFF
YVKKKKTSKYVQATMTSSTRGVQTKIIPSYEAAIRKLDDEKFMLQNRLEEVNDKFTRLTM
TSRTETTTANKKIAELEGDLKSANERAALATQQLEGENRKITKDRQTWMDSIKIMKKQVK
DAQDEALQLHRVVEEKEKEILNSRRKLSSLTSESTKLTGDREKLTRLLDDEKKRTMEAEL
QTLETKENLGLRVLVKARSDCHKISMDMERLARQCVENATIYRELGAGYNIWRSNMEACS
SLIKQINKQFAAQSEQIRSGVPLKDLPEIQIPNPPPPGPMPQQIMMRLRITGQPLNLQAL
SPKETGEPPAPPMPTPRVESPRSSGSPRPPQRPIGTGKPQPRNLQPNNNQQNNEATAAPP
KGSFERIMIQLSTLFPNTARQDLALCIKEVRQNNNNSLTGLSLDDIIKQASIVLHKKGIV
RSQSGASAPHNGGASVHTWKPQLQTTYRGNDDDEPCVICHEALHALTVHKLKCGHVFHND
CLRQWLSRNRTCPTCRGHAIDTSEYPALS
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcgttgggtcgcagatatcgatgacggcgcctgagaagtttgttttatattac
gtacgtggttccgcttctttggagacgaggttacccggcgaaatacgaagctcgattaat
tatttcaactttatctgcggtaacgaacgacccgtcgcaactttcaaccacccgatggcg
ctatacgctaaggctcatgctctttatttactcaataatttcacggtgagcggtgaagca
ttacaacaagccaatcatgtgatcaatcgaagtcagttccgtggattcctcacttaccca
ggaactgaccaagttattccggaatcatctttgtcaaaactttctcaattaatgaaacaa
ctagcgtcattgttacgacaccccccatcacctatagctgtgtgcagatatgacgactgt
tataaagaaaataaaagaaaagaaatttattcaactgattttaattttgaggggtttgtt
caagtttcctgtcattggaagtgcgtgatttgttttcatattaaatgttggaccaaacta
aggaacgaaacatacgagaaaaaaagagacaaagatgtgtttacccaaccatgcgtaacg
gacgggtgtcgaggacaaatttataagatttctattattgatgaatttgaacaaataaag
aaacataaatgggaaggtaatttaattgacgagcgagttgctaagcaacacgtcaaacaa
tcgaagaatgatagaaattttataaaacgtcgcaaatcgatgaaagaagcgaaagaacga
aagttgaaatggagggaaagcaaccgagtcgaggagttacctgaagaaaataaagagcct
gaagttttgaaagaaattccagaaaataaacctttgaaagtaattacagagcaagatata
ttgaacgctcaagtgttgaggaaagatgagaaagaaattgaaacgacgaccaaaaccgtt
aagaataaaaagaacaaacaaaagaagaaaggtgctgtaagtctacgggattttcttggg
ggaggaaatattacaagtgaacaagcatttgaaataagtgaaaatgaaaaattattgatg
gatatatactcttactttgaagatttcttttcccacaacggcccaatgcatgtcaccaat
gctttacttatacaacaaatattccatctcccaaacaacatgcgctcgtgcgtctaccaa
cataatgggattatttcatttcttaaaatgaatccacgaaaattctgtcttgtgaggtca
tacattggattgttacgtcacgaagaacaattgtttaaactcgccgatattgacgatgaa
ttgttggctgctcaggaaagcaaactactggctgagaatatgatgttggattcactggac
acctttggaggaaattcagattttgctcgagatttgtatcaagttggggacattccctta
gataagattgtcgacataacagggattcccccgagtgaaaatccccctcaaagtaacaaa
acgggggtttcccctccagattactctgatacagaaagtcaacctgttttaaacgaagcg
ggccccccaccaaaccgtttgctttcatggaccaaactatccgatgaccaattcatggcc
aaacaaaaagctgtgggcgagagttccccttatgtaagcaatcctactgggaatctccct
tttacggatgccaatgtggaaaaagtctccaatagaaatccccctggtttgaccttacca
gctagaattccccctgctgggaatccccctgttgtaaaatcccctgctgggaatccccct
gttgtaaaatcccctgctgggaatccccctgttgtaaaatcacctgctgggaatccccct
gttgtaaaatcacctgctgggaatccccctgttgtaaaatcctccgctgggaatccccct
gttgtaaaatcacctgctgggaatccccctgttgtaaaatcacctgctgggaatccccct
gttgtaaaatcacctgctgggaatcccccagttgtaaaatcccctgctgggaatccccct
gttgtaaaatcacctgctgggaatccccctgttgtaaaatcacctgctgggaattcccct
gttggaaaatcccccgctggaaatccccctgttgtaaaattacctgctgaaaatttccct
gttgtaaaatcacctgctgggaatccccctgttgtgagtgacaattcactttcgaataaa
atggacgaatatttgggaagttctattccacagacatcaggcgccttgtcaatagacggg
gttacgatttcccctccccccaaccttcctactagtggtggtatcaacgctacaaagctc
ctggacccttcctcaggcacgcaaccaccacaagatgacccaaatattataaaagctttt
aacctaagtggtggaaggggtttgttccaagacacaatcaacataaacacttctgatgtc
gcccctgtgccagatgatgcgaacctcccgttcaaaagagacggaaacacaaagtttttc
tacgtcaagaaaaagaaaacaagcaaatatgttcaagctacaatgacgagcagcacacga
ggggttcaaacaaagatcattccttcgtatgaagctgctattcgtaaactggatgatgaa
aagtttatgttgcagaacaggctagaggaagtaaatgataaattcacacgcctcacgatg
acatcacgcacggagaccacgacagccaataagaagatagcagagttggagggagatttg
aaatcagccaatgagagagcagcattggcaactcagcaactggagggggagaatcgtaaa
ataacgaaggatcggcaaacgtggatggactcgatcaaaattatgaagaaacaagttaag
gatgctcaagacgaggctcttcaactccatcgtgtggtggaagaaaaggaaaaagaaatt
ttgaattctcgtcgaaagttgtcgtcgttgacgtcagagtcgacgaaattaacaggagat
cgcgagaagttgacgaggttgctcgatgacgagaagaagcgcacgatggaggcagagtta
caaacattggaaacaaaggagaatctcggacttcgtgttttggtgaaagctcgtagcgat
tgtcataagatatctatggatatggaaagactagcaaggcaatgcgtggagaacgccact
atatatcgcgagcttggtgcagggtataatatatggagatcaaacatggaggcttgctcc
tcgcttataaaacaaatcaataaacagttcgctgcacaatcggagcagataaggagtggg
gttccactgaaggatttacccgagatccaaatacccaaccccccgcccccaggtcccatg
ccacaacaaataatgatgaggttaagaataacgggccaacccctcaacctacaagccttg
tcacccaaagaaaccggggaacccccagccccacccatgccaaccccaagagtggaaagt
ccccgaagtagcgggtcaccccggcccccacaacgacccatcgggacggggaaaccccaa
cccaggaatctccaacctaacaacaatcaacaaaacaacgaagcaacagcagcgccacct
aagggaagtttcgagcgcataatgatccaactttcgacgttgtttccgaacactgcaaga
caagaccttgccctctgcataaaggaagttcggcaaaacaacaacaattcgttaaccggt
ctctctcttgatgacatcataaagcaagcttccattgttcttcataagaaggggattgtt
cggtcacaaagtggggcgtcggctcctcataacggtggggcgtcggtccacacatggaaa
ccacagctacagacaacgtaccgaggcaacgatgacgacgaaccttgtgtgatctgccat
gaagctttgcatgcgttgactgttcataaacttaagtgtggacatgtattccacaacgat
tgtttacgacagtggttgtcgcgtaatcgaacttgcccgacgtgtcgcggtcatgccatt
gatacgtcagaatatcctgcattgtcatga
DBGET
integrated database retrieval system
