Ciona intestinalis (yellow sea squirt): 100177388
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Entry
100177388 CDS
T01056
Name
(RefSeq) small nuclear ribonucleoprotein Sm D1-like
KO
K11087
small nuclear ribonucleoprotein D1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100177388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100177388
03032 DNA replication proteins [BR:
cin03032
]
100177388
Spliceosome [BR:
cin03041
]
Complex A
U1 snRNP components
Sm proteins
100177388
U2 snRNP components
100177388
Complex B
U1 snRNP components
100177388
U4/U6.U5 tri-snRNP components
100177388
Complex C
U2 snRNP components
100177388
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
100177388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Gemin7
API5
Motif
Other DBs
NCBI-GeneID:
100177388
NCBI-ProteinID:
XP_009858834
Ensembl:
ENSCING00000024100
LinkDB
All DBs
Position
6:complement(1079086..1080796)
Genome browser
AA seq
121 aa
AA seq
DB search
MKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNRDPVNLDTLSI
RGNNIRYYILPDSLPLDTLLVDEGPKQPKGGFRDRGRGRGRGRGRGRGVRGRGRGGPPRR
F
NT seq
366 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttgcaagatttttgatgaaacttagtcacgaaactgtgacaattgaattgaaa
aatggaacacaagtgcatggaactattactggtgttgacatctgcatgaacacacattta
aaatcggtgaaaatgacagtaaagaaccgagatcccgtaaacctggacactttgagtatt
cgtggcaacaatatccgttattacatcctcccagacagtcttccccttgatacactgcta
gtggatgaaggaccaaagcaacctaaaggaggatttagagatcgtggaaggggtcgtggt
cgaggacgtgggcgtggtcgtggagttcgtgggcgtggcagaggcggaccaccacgtcga
ttttaa
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