Ciona intestinalis (yellow sea squirt): 493183
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Entry
493183 CDS
T01056
Symbol
rhamm
Name
(RefSeq) hyaluronan-mediated motility receptor
KO
K06267
hyaluronan-mediated motility receptor
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
493183 (rhamm)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cin04090
]
493183 (rhamm)
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
493183 (rhamm)
CD molecules [BR:
cin04090
]
Proteins
493183 (rhamm)
Glycosaminoglycan binding proteins [BR:
cin00536
]
Hyaluronan
Cell surface receptors
493183 (rhamm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMMR_C
HMMR_N
FapA
ATG16
Fez1
DIL
Motif
Other DBs
NCBI-GeneID:
493183
NCBI-ProteinID:
NP_001007565
Ensembl:
ENSCING00000007486
UniProt:
F6XWF2
LinkDB
All DBs
Position
2:1527705..1541976
Genome browser
AA seq
779 aa
AA seq
DB search
MSFPRAALKRFNEAKDSGPPPGHYTVKQPEKNLGTFKFEHAGERFKSMESIPDESVQADN
NTFTAPVPPITNSKKKLNFSGSENKKPEKRRTPVKSSPNVVSKEKQAYEREIRQLLQQCS
DREADIKRHKLEIQRFEGKVSILTKDKISLESNTSLMEKSIAALTKKNEFLIAQCEKEKK
KENSELDLKKLKTQILSMKQQSDRDKMKIANLEADLDAARSRIMALRDANKVLEQLNLEI
EKHGSDVSVQVERLQGLVDKLREENARLQDEGEDTKLKLTEIQEEFNEKLQCVLQERMKE
CENKTQAANKQVAELQTNIQDADAKLEELSETVNLLQCEKSDMHAVNVKLQQHISETEQR
CETFAAEESERKNELKKRIMEVETAQVEIENLQKELKENKEKHESVLKETDERRAEALEE
SRALNKKLDALAKCEAELSQEVSNKTSETEQLRGQLESVTSSKNDLAQEVETIKKELGLL
RADHMEKSKKLNEVETEKKTLMEQLDDNKHQLERHKEASMTSEAKYLDLEKQFASANQNA
MAIKMREEKLRLEVEDARMTWKQEEEGHHEKLKEFTRRILDTQKKLNQRENEVKTLTEEL
VSIKRAMDDLNDKSNEQCRNSEVEISSLKAKNEQLECDVTKLTEGINELKEAVESKGNAD
ETEKWKTLYEELLEKVKPFQGQLDAYSAEKAMLLSETSAAQAETTRLGLKYAELLGHQNQ
RQKIKHIVKIKEESVALKQENTKLRNQVSLLTKQVVKSRKPVFDPATAFQHHKENANPN
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttcctagagcggcattaaaaagatttaatgaagcgaaagattctggccctcct
cctggccactacaccgtaaaacagccagaaaagaaccttggaacatttaaatttgagcat
gctggtgaaagatttaaatcaatggagtcaattccagatgaaagtgtacaagctgataat
aatactttcacagctcctgttcccccaataactaacagcaagaaaaagttaaacttttct
ggctcagaaaataaaaagccagaaaaaagaagaacaccagtgaaaagttcacctaatgtt
gtttcaaaagaaaagcaagcctatgaaagggagattcgtcagctgttacagcagtgtagt
gacagggaagccgacatcaaacgtcataaacttgaaatccagcggtttgagggaaaagtt
agcattctaaccaaggataagatttcacttgaaagcaatacaagccttatggagaaaagt
atagcagcactgactaagaaaaatgagtttcttatagctcagtgtgaaaaagagaagaaa
aaggaaaacagtgagttggaccttaaaaaactaaaaactcaaattttgtcaatgaagcag
caaagtgatagagacaaaatgaaaattgccaacttggaggcggacctggatgctgctagg
tcaaggattatggctttgcgagatgcaaacaaagtgttagagcaactaaaccttgaaatt
gaaaagcatggaagtgatgtatccgtgcaggtggaaagattacaaggattggtggataaa
ctcagagaagaaaacgctcgacttcaggatgaaggagaagatactaaattaaagctcaca
gagattcaagaagagtttaatgaaaaactacagtgtgtgctccaagaacgtatgaaggaa
tgtgaaaataagacacaggctgccaataagcaagttgcagaattgcaaaccaacatacaa
gatgcagatgcaaagcttgaggaattgtcagaaacagtgaacttattgcagtgtgaaaag
tctgacatgcatgcagtgaatgtaaagttgcaacaacatatatctgaaactgaacaacga
tgtgaaacatttgctgcagaggaaagtgagcgaaaaaatgaattaaagaagagaattatg
gaagtggaaaccgctcaagtggaaattgaaaatcttcaaaaggaattgaaagaaaacaag
gagaagcatgaaagcgttttgaaggagactgacgaaagacgcgccgaagcacttgaagaa
tcaagggctctgaataagaagctagatgcattggcgaaatgtgaagccgaattgtcgcaa
gaagtttccaacaaaacttccgaaaccgaacaacttcgtgggcagcttgagtcggtgacg
tcatctaagaacgatttagcccaagaggtggaaactataaaaaaagagcttggcttgctg
cgtgcggaccacatggaaaaatcaaaaaagctaaacgaagtggaaacagagaagaaaacg
ttgatggaacagttggatgataataaacatcaacttgaaagacacaaggaagcgtcaatg
acgtctgaggcgaaatatctcgatttggaaaagcagtttgcatcagctaatcagaatgct
atggcgataaaaatgcgggaggagaagttgagattggaggtggaggatgcaaggatgaca
tggaagcaggaagaggaagggcatcatgagaaactcaaggagtttacaaggaggattttg
gacacgcagaaaaaactgaaccagcgtgaaaatgaagtgaaaactttaacagaagaatta
gtgagcattaagagagctatggatgatttgaatgataaatccaatgaacaatgtcgaaac
tcggaagttgaaatatcaagtttgaaagctaaaaacgagcaacttgagtgtgacgtcaca
aagctgaccgaaggaattaacgagctgaaggaggcggtagaaagcaagggaaatgcggac
gaaacagaaaaatggaagacattgtatgaggagttattggagaaagtgaagcctttccag
ggtcagcttgacgcctactcagcagagaaagcgatgcttttgtccgaaacatctgctgct
caagctgaaactactagacttggtctaaagtatgcggagttacttggccatcagaaccaa
cggcagaaaattaaacatatcgtgaaaatcaaggaagaaagtgttgcattgaaacaggaa
aacacaaaattgcgaaaccaagtatctctgctgacgaagcaagtcgtaaaatcccgtaaa
cctgtgttcgaccctgctactgcatttcaacatcataaagagaacgccaaccccaactaa
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