KEGG   Citrus sinensis (Valencia orange): 102613336
Entry
102613336         CDS       T02983                                 
Name
(RefSeq) uncharacterized protein LOC102613336
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102613336
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102613336
   03400 DNA repair and recombination proteins [BR:cit03400]
    102613336
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102613336
Messenger RNA biogenesis [BR:cit03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     102613336
DNA repair and recombination proteins [BR:cit03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      102613336
SSDB
Motif
Pfam: DEAD Helicase_C RQC HTH_40 RecQ_Zn_bind HRDC ResIII
Other DBs
NCBI-GeneID: 102613336
NCBI-ProteinID: XP_006491905
LinkDB
Position
7:complement(join(20270773..20270898,20271000..20271377,20271510..20271719,20271803..20272015,20272837..20272930,20273064..20273134,20275062..20275233,20275468..20275510,20276227..20276335,20287800..20287936,20288013..20288136,20288659..20288890,20289074..20289159,20289826..20290033,20290930..20291013,20291321..20291407,20291528..20291746,20291849..20291961,20292059..20292109))
AA seq 918 aa
MRRSVETERGEMESTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP
LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPE
KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA
TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG
SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG
MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT
ENQRTAIMESLLAAQRYCLLTTCRRKFLLNHFGETYSAETCGNCDNCMVSNRERDMSRES
YLLMTSIQACGGYWGLNMPIDVLRGSRSKKVVDAQFDKLLLHGLGKDHSSNWWKTLAYQL
ISYGYLTETIKDVYRTVSVSQQGKQYLGSARPDHQPPLLLTFNGEMVDAEEHETISSNVG
DLKSSATLENEGFSEADMQLYHMLLEERKKLARVTGTAPYALCGDQTIKKIALARPSTKA
RLANIDGVNQHLVITHGDHLLQTIRHLSQKLNLSLDGKVGEHTAFTRKLHVVVNTRTKLT
PAKCEAWKMWHEDGLSIQKIANYPGRSAPIKEQTVVDYLLEAVSEGFDINWTRLCDEVGL
TDEIFSAIQEAISKVGCKDKLKPIKNELPDDITYAHIKACLVMENCGISPEVIPPSQKKG
NTDELPSKASETWHAEEPHEVEECGKSMVTFGCAYNNKEMTSLPVTKAEVQELSVGCGDD
ELCSHKRQRVDCPDGGFTVLEATASSVLNLLQKHDEGLPLFDILEHFNGSKSEAVIDLLS
CLERDFMIFKKNNFYWLM
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgagacgaagcgtcgaaactgagagaggagaaatggagtctactctcaagaaatacttt
gggtattcggtgttccgcccataccagaaagatgttattcaaagaattatagagaaaaga
gactgtttggtggtcatggctactggcagtggcaagtctttatgctatcagcttcctcca
ttagttactggaaagaccgccctagttgtaagcccccttatatcattgatgcaagatcag
gtaatgagtttaaaacagaggggcatcaatgctgagtttcttggaagtgctcaaactgat
tccagtgtccagacaaaagctgagactggttattttcagttattatttatgactccagaa
aaagcttgcataattcccatcagcttctggtcaaaattgcttaaggcgggagtttgtttg
tttgctgtggatgaagcacattgcatatcagaatggggccatgattttaggttggaatac
aagcagttagacaagttacgcacctttcttctgggtgttccatttgttgccttaactgca
actgctactgaaaaggtccgtattgacattatcaattccctcaaattgaagaatccatat
gttacaattgcatcatttgatcgaaaaaatctcttctatggagttaaagttattaatcgt
ggtcaatcatttgtggatgagcttgtgcaagaaattttgaagtctgttgctggtgccggc
tctatcatcgtttactgcatgacaatcaaagatgttgaggagatttccaaggcacttaag
cagttgggagtaaaggctggaacctatcatggtcaaatgggcagtaaagctcgtgaagag
gcccatagattatttattagagatgaaattcgtgttatggttgccactatggcttttggc
atgggcattgataagcctgacgttaggcatgtgatacactatggttgcccaaagacttta
gagtcctattatcaagaaagtgggcgatgtggtagagatggtatagcctctgtctgttgg
ctttattatgcgagaagcaactttgcaaagggcgacttctactgtggagaatctcaaaca
gaaaatcaaagaacagctattatggagtcactacttgctgcacaacgatattgtttactg
acaacttgcagaaggaagttcttgcttaatcattttggggaaacttattcagccgaaaca
tgtggaaattgtgataactgcatggtctcaaacagggaacgtgacatgtcaagggaatcg
tatcttttgatgacttctattcaagcatgtggaggttactggggtcttaatatgccaata
gatgttcttcgtgggtctcgatcaaaaaaagtagttgatgctcagtttgacaagctcctg
cttcatggacttgggaaagatcactcatcaaattggtggaaaacactcgcttaccaatta
atttcttatggttatctgacagagaccatcaaagatgtatacagaactgtaagtgtcagt
caacaaggaaagcaataccttggttctgcaagaccagatcatcaaccacctttacttctg
acatttaatggggaaatggttgatgccgaggaacatgaaaccatatcaagcaacgttggg
gatttgaagagttcggctactttggaaaatgagggattttctgaggccgacatgcaactc
tatcatatgcttttggaagagagaaagaagcttgcaagagtcactggaactgctccatat
gctctatgtggtgatcaaacaatcaaaaaaattgcattggcaaggccatctaccaaagca
aggttggcaaacattgatggtgtcaatcagcaccttgtaattacacatggggatcatctt
cttcaaactattaggcacctatcacaaaagctaaacctttccctggatggcaaagtaggt
gaacatactgcttttacgagaaaactgcatgtagtagtcaacactcgcacaaaattgaca
ccagcgaagtgtgaagcttggaagatgtggcatgaagatggtctatcaattcagaaaatt
gctaactaccctggtaggtcagctccaataaaagaacaaactgttgtcgactatcttttg
gaggctgtctcggaaggatttgatattaattggaccagactctgtgatgaggttggactg
acagatgagatattctcagctattcaggaagctatttcaaaggttggctgtaaagacaag
ttgaagcctatcaaaaatgaattaccagacgatataacttatgcacacatcaaggcttgt
ctggttatggaaaactgtgggatttctccagaagtgattccacctagccaaaaaaagggg
aatacagatgaacttcccagtaaggcatctgagacatggcatgctgaagaacctcatgaa
gttgaagagtgtggaaagagtatggttactttcggctgcgcatacaataacaaagaaatg
acttctcttcctgtcacaaaggccgaggtacaagagttatcggtaggttgtggtgatgat
gagctgtgttcacataaacgccaaagagttgattgcccagatggaggtttcactgtactt
gaggcaacagcgagttccgtgttaaacttgcttcagaaacatgatgaggggcttccactg
tttgatattttggagcacttcaatggatccaaatcagaagctgtgattgatctgctgagt
tgcctggagagagatttcatgatctttaagaagaataatttttattggctgatgtga

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