Citrus sinensis (Valencia orange): 102627326
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Entry
102627326 CDS
T02983
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
102627326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cit03000
]
102627326
Transcription factors [BR:
cit03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
102627326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
Nucleo_P87
Motif
Other DBs
NCBI-GeneID:
102627326
NCBI-ProteinID:
XP_006491389
LinkDB
All DBs
Position
3:complement(join(47012647..47013054,47013180..47014631,47014723..47014947,47017347..47017408,47017643..47017754,47017910..47017948))
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AA seq
765 aa
AA seq
DB search
MDTYSSGEDLVLKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKKAVQ
IRSHAQKFFSKLEKEALSKGVPIGQAIDIDIPPPRPKRKPRNPYPRKTCTNAPMSQIGAK
DGKLRSSVSSLRCNQVLDLEKEPICDRPNGDEKPTYTIESQKDNCSEVFILHQEAHCSSV
SSVNKNSMPTPVGLRDSCNLREFVPSLKEVVNQDETRESYVTVELKANEKFGKPDAKLAL
QDNGSSKPLNLENACPSHEKSVHGEKRDDVADALPTAEVQATQNYPRHVNVHILDGSLGT
GTQSPSDMPMQESIFHPIGEVHGNPNLFTNPAASATTENESNVPKSTHQSFPTFHPPFTQ
FRHDQDDYRSFLHISSAFSSLIVSTLLQNPAAHAAASFAATFWPYTNMETSADSPTCPQG
GFLSRQMSSPPSMAAIAAATVAAATAWWAAHGLLPLCAPFHTPFTCPPACATAVSSMDTA
QVPAAKTDKNDNTPPNPALKDHQPDLEYSEALQAQNSASKSLTVLTSDSEESASAKLKME
LKATDHEKNSEENELHDSNKTKNRKQVDRSSCGSNTPSSSEVETDALEKQEKGKEESKEI
DPSLPATDPGNRRSRSSSNITDSWKEVSEVGRLAFQALFSREVLPQSFSPPHDLKDKMQQ
DNVEDKQNGNKKDGDKSLFDLNSKTWGSCFGHQEVEKSTVSGVENNGGEGLLTIGLGHGK
LKARRTGFKPYKRCSVEAKENRILNTGNQAEEKCPKRIRVEGATT
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggacacctactcctctggcgaagacttggttcttaagacaaggaagccatatacaatt
acgaagcaacgtgaacgatggacagaggaggagcataataggtttctagaagcgctgaag
ctttatggccgtgcttggcaacgcatagaagaacatatagggacaaagaaagctgtgcag
atcagaagtcatgcacaaaaattcttttccaagttggagaaggaggctctttctaaaggg
gttcctataggtcaagcaattgacatagacattcctcctccacgtcctaaaaggaaacca
cgcaatccttatcctcgaaagacctgcacaaatgctcctatgtcacagataggagcaaag
gatgggaaacttcgaagttcagtttcttctttgcgttgcaatcaagtgctggacttggag
aaagaaccaatttgtgataggcctaatggtgatgagaagccaacttatactatcgaaagt
cagaaggacaactgctcggaagtgtttatactgcaccaagaagctcactgttcctctgtt
tcttctgtgaataaaaactccatgccaacaccagtggggctcagagactcttgcaatctc
agggaatttgttccatcactgaaagaagtggtaaatcaggatgaaacacgtgaatcttat
gtcactgttgaacttaaagcaaatgagaagtttggtaaacctgatgccaaactggcactt
caggataatggctcaagtaaacccttgaacttggagaacgcctgcccttcacatgagaag
tcagttcatggtgaaaaaagagatgatgtggccgatgcattgccgacggctgaggtgcaa
gctacgcagaactatccaaggcacgtaaatgtgcacattctagatgggagccttggaaca
ggtactcaaagcccttcagatatgcctatgcaggagtccatatttcatcctataggagaa
gttcatggaaatcctaatctgttcacaaatccagctgcgtctgctactactgaaaatgag
agtaatgtgccaaaatctactcatcaatcatttccaactttccatcctccctttacccaa
tttcgccatgatcaagatgactatcgatcatttctacacatctcatccgcattttcaagt
cttatagtgtctactctgttacaaaaccctgcggcccatgctgcagcaagctttgctgct
acattttggccctatacaaatatggaaacttcagctgattctcctacatgtccgcagggt
ggtttcttatctagacaaatgagctccccgccaagtatggcagctattgccgcagccact
gtagcagctgccactgcatggtgggcagcacatggactgcttcccttgtgtgccccattt
catactccttttacctgccctcctgcttgtgcaactgcagtttcatcaatggatactgca
caagttccggcagccaagacagacaaaaatgacaatactcctccaaatcctgccttaaag
gatcatcaaccagaccttgaatattctgaagctttgcaagctcaaaattcagcgtctaaa
tcactcactgtgttaacatcagattccgaggagagtgcaagtgcgaagcttaaaatggaa
ctgaaagctactgatcatgagaagaattctgaagaaaatgagcttcatgattcaaacaaa
acaaaaaacagaaagcaggtagaccgttcatcatgcggttccaatacaccttctagcagt
gaagttgaaactgatgcattagaaaagcaagagaaaggcaaagaggagtctaaagaaatt
gatccgagtcttcctgccaccgatcctggtaaccgtcgtagtagaagcagcagtaacatt
accgattcttggaaggaagtttctgaagtggggcggctggcttttcaagcactcttctct
agagaggtattgcctcaaagcttttcacctccacatgatctgaaggacaaaatgcagcag
gacaatgtagaggataagcaaaacggcaataagaaagatggagataaatcacttttcgat
ctcaacagcaagacatggggttcttgtttcggccatcaagaggtggagaaaagcacggtg
tccggagtcgagaacaatgggggggaggggctgctgacaatcgggcttgggcatggtaaa
ctgaaggcccgtcgaactggttttaaaccttacaaaaggtgttctgtggaggccaaagaa
aacagaatactcaacaccggcaaccaagccgaagagaaatgccccaagaggatacgcgtg
gaaggagcaacaacttga
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