Campylobacter lari RM2100: CLA_0449
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Entry
CLA_0449 CDS
T00858
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cla
Campylobacter lari RM2100
Pathway
cla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLA_0449 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cla03021
]
CLA_0449 (rpoB)
03400 DNA repair and recombination proteins [BR:
cla03400
]
CLA_0449 (rpoB)
Enzymes [BR:
cla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLA_0449 (rpoB)
Transcription machinery [BR:
cla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLA_0449 (rpoB)
DNA repair and recombination proteins [BR:
cla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLA_0449 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ACM63802
UniProt:
B9KFG7
LinkDB
All DBs
Position
417406..421539
Genome browser
AA seq
1377 aa
AA seq
DB search
MLNSQSGNRLRIDFSNVPQQIDIPNLLQLQKKSFDYFLNIDAKNSESGIEKVFKSIFPIH
DPQNRLSLEYVSSEVGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKIGIKDI
KEQEIYIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIP
DRGSWLYFEYDAKDVLYVRINKRRKVPITILFRALGYKKQDIIKLFYPIQTIHVKKDKFL
TEFNPNDFLDRVEYDLKDEKGNIIHQAGKRMTKKKAEQLVKDGIKWVEYPVEILTNRYLA
NPIINKETGEVLFDSLTLLDESKLAKIKEQKTFDIANDLANGVDAAIINSFIQDNETLKL
LKQTENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHK
LGLDTPEYVTVLTNEDIVKTAKYLIKVKNGRGHIDDRDHLGNRRIRSIGELLANELHVGL
AKMQKAIRDKFTALNTDIDKVMPYDLINPKTITVTIMEFFTGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNDLGF
VEAPYKKVENGKVSNEIVYLTATQEEGLVIAAASTKIDEKGSIVEEFVEARQDGETILAR
REEVHLIDLCSGMIVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTAQAPIVGTGMEK
IIARDAWEAIKAKRAGIVEKVDNKNIFILGEDENGPFIDHYKMEKNLRTNQNTTFTQHPI
VKKGEFVQVGQIIADGPSMDQGELAIGKNALIAFMPWHGYNYEDAIVISEKILREDTFTS
VHIYEKEVEARELKDGVEEITKDIPNVKEDDLAHLDESGIAKIGTHIKPGMILVGKVSPK
GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASMEGVVVDVKIFTKKGYEKDARAIKAYD
EEKLNLEKEHHDRLLMMDREETLRVCSLLSKSALNSDEEINGQKYKKGAKVDIKELEKIN
RFALNSLVKAYSKDVQKEYEDLKNHFQNEKKKLKSEHDEKLEILEKDDILPSGVVKLVKV
YIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPDGRPIDIALNPLGVPSRMNIGQI
LESHLGIVGMRLGDQIQEIFDKKQKDFIKQLRTKILEICSVSRLTLEKKFVESLNDEQLI
SYARDWARGVKFATPVFEGVTVEEFSKLFEMAKIAMDGKSELYDGRTGEKMAERVHVGCM
YMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREM
LTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDENNE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattcacaatcaggaaatcgtttaagaatagacttctcgaatgttccacaacaa
atagacattccaaatttattacaattacaaaagaaaagttttgattattttttaaacata
gatgcgaaaaattcagaaagtggaattgaaaaagtatttaaatctatttttccaattcat
gatccgcaaaatagattaagtttagaatatgtaagtagtgaagtgggcaaacctaagtac
actattagagagtgtatggaaagaggtttgacttattctgtaaatttaaaaatgaaaatt
cgccttactttacatgaaaaagatgaaaaaacgggtgaaaaaattggtataaaagatatt
aaagaacaagaaatttatattagagaaattccattaatgacagatagaatttcatttata
ataaacggcgttgaaagagtggttgttaatcaacttcacagaagcccaggcgttattttt
aaagaagaagaaagttcaactgttgcaaataaattagtatatacagctcaaattatacca
gatcgtggttcttggctttattttgaatatgatgctaaagatgtgctttatgtgcgtatt
aataaaagaagaaaagtgcctattacaattttatttagagcactcggttataaaaaacaa
gacattataaaattattttaccctatacaaactattcatgttaaaaaagataaattttta
acagagtttaatccaaatgactttttagatagagtcgagtatgacttaaaagatgaaaaa
ggtaatataattcatcaagctggtaaaagaatgacaaagaaaaaggctgaacagcttgta
aaagatgggattaaatgggttgaatatccagttgaaattttaacaaacagatatttagct
aatcctattattaataaagaaactggtgaggttttatttgattctttaacgctattagat
gaaagcaaactagctaaaattaaagaacaaaaaacatttgatatagcaaatgatttggct
aatggagtagatgctgcaattataaattcattcattcaagataatgaaactttaaaatta
ttaaaacaaactgagaatatagatgatgagaatgatttagcagctattagaatttataaa
gtaatgagaccaggggaacctgtagtgaaagatgcggctaaggcttttgtaaatgattta
ttttttaatcctgaaagatatgatttaacaaaagttggccgcatgaaaatgaatcataaa
ttaggcttagatacacctgaatatgttacggttttaaccaatgaagatatagtaaaaact
gcaaaatatttaattaaggtaaaaaatggtagaggtcatattgatgatagagaccatttg
ggtaatcgtcgtattagatcaatcggagagcttttagctaatgaattgcatgttggctta
gcaaaaatgcaaaaggctattagagataaatttacggctttaaatacagatattgataaa
gtaatgccttatgatttgattaatcctaagacaattactgtaacaattatggaatttttt
accggcgggcaattatctcaatttatggaccaaacaaacccattaagtgaagtgactcat
aagcgtcgtttatcagcacttggtgaaggtggtttggttaaggaaagagctgggtttgaa
gtgcgtgatgttcatgcaactcattatggaagaatttgtcctgttgaaactccagaaggt
caaaacatcgggttaattaatacgctttcaacttatgctaaagtaaatgatctgggtttt
gttgaagcaccttataagaaagtagaaaatggaaaagtaagtaacgaaattgtttacttg
actgctactcaagaagagggtctggtgattgctgcagcttcaactaaaatcgatgaaaaa
ggtagtattgttgaggaatttgttgaagcaagacaggatggtgagactatactagcaaga
agagaagaagtgcatttgattgacctttgttcgggtatgattgtaggggttgcagcgtcg
ttaatcccatttttagaacatgatgatgcaaatagggctttaatgggttcaaacatgcag
cgtcaagcagtgcctttactaaccgcacaggctcctatagtgggtactggtatggaaaaa
attatcgctcgtgatgcttgggaagctattaaagctaaaagggcagggattgtagaaaaa
gttgataataaaaatatttttattttgggtgaagatgaaaacggaccatttatagatcat
tataaaatggaaaaaaatctaagaacaaatcaaaatacaacttttacgcagcatccaatt
gttaaaaaaggagaatttgttcaagtaggtcaaatcattgctgatggtccaagtatggat
caaggtgaacttgctattggcaagaatgccttaatcgcatttatgccatggcatgggtat
aactatgaggatgcgattgttattagtgaaaaaatattgcgcgaagatacctttactagt
gtacatatctatgaaaaagaagttgaagctagagaattaaaagatggtgtagaagaaatt
actaaagatataccaaatgttaaagaagatgacttagcacatcttgatgaaagtggtatt
gcaaaaattggtactcatattaaacctggtatgattttagttggtaaagtttctccaaaa
ggtgaagtaaaaccaacccctgaagaaagattattaagagctatttttggtgaaaaagca
ggacatgttgtaaataaatctttatatgcaactgcttctatggaaggtgttgttgttgat
gtaaaaatctttactaaaaaaggctatgaaaaagatgctagagctattaaagcttatgat
gaggaaaaattaaatttagaaaaagaacatcacgatagacttttaatgatggatagagaa
gaaactttaagagtttgttcattgctttctaaatctgctttaaattcagatgaggaaata
aatggtcaaaaatataaaaaaggcgcaaaagttgatatcaaagaacttgaaaaaattaat
cgttttgcgttaaattctttagttaaagcgtattctaaagatgttcaaaaagaatatgaa
gatttaaaaaatcatttccaaaatgagaagaaaaagctcaaaagtgagcatgatgaaaaa
cttgaaattttagaaaaagatgatattttaccaagtggagtagttaaacttgtaaaagtt
tatatagcaaccaaaagaaaactcaaagttggtgataaaatggctggacgccatggaaac
aaaggtatagtttcaaatatcgttcctgaagttgatatgccatatttacctgatggaaga
cctattgatatagctttaaaccctttaggtgttccaagtcgtatgaatataggccaaatt
cttgaaagtcacttgggtatagttggtatgagacttggtgatcaaattcaagaaattttc
gataaaaaacaaaaagattttattaagcaattgcgaacaaaaattcttgaaatttgtagc
gtatcaagactaactttagaaaagaaatttgttgaaagtttaaacgatgagcagcttatt
tcttatgcaagagattgggctagaggcgttaaatttgcaactcctgtatttgaaggtgta
actgtagaagaatttagcaagctttttgagatggcaaaaatagctatggatggaaaaagt
gagctttatgatggaagaaccggtgagaaaatggcagaacgcgtacatgttggatgtatg
tatatgctaaaactgcatcacttagttgatgaaaaagtgcatgcaagaagcacaggacct
tatagcttagtaacacaacaaccagttggtggtaaagcattatttggtggtcaaagattt
ggtgagatggaagtttgggctttagaagcttatggtgcagcgcatactttaagagagatg
cttactataaaatctgatgatgttgagggaagatttagtgcttataaagctttaacaaaa
ggtgagaatgttccagctactggtattccagaaacattctttgtacttacaaacgaatta
aaatctcttgctttagatgttgagatttttgataaggatgaaaataatgagtaa
DBGET
integrated database retrieval system
