Clostridium sp. BNL1100: Clo1100_2326
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Entry
Clo1100_2326 CDS
T01708
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
clb
Clostridium sp. BNL1100
Pathway
clb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clo1100_2326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clb03019
]
Clo1100_2326
03009 Ribosome biogenesis [BR:
clb03009
]
Clo1100_2326
Enzymes [BR:
clb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clo1100_2326
Messenger RNA biogenesis [BR:
clb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clo1100_2326
Ribosome biogenesis [BR:
clb03009
]
Prokaryotic type
rRNA helicases
Clo1100_2326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AEY66500
UniProt:
H2JEC6
LinkDB
All DBs
Position
complement(2653633..2655078)
Genome browser
AA seq
481 aa
AA seq
DB search
MNPAFSDYKLSSEILKAISMLNFKSPTKVQEKVIPAVLEQKDIIVKSQTGSGKTAAFAVP
ICELVEWDENKPQALVITPTRELAIQVKEDMFNLGRFKRLKVSAIYGKSPFYNQEKELKQ
KTHVVVGTPGRIIDHIERNTFDTSKIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTV
LLSATMPRDIEALCNKYMKEPIRVEIEEQNPTAERVHQERYDVDRVNKINLLRDITIVEN
PDSCIVFCNTKQKVDEVYNKLSLFKYSCEKIHGGMEQRDRLRVMNNFKRGYFRYLIATDV
AARGIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAITFVTKDESKYLNDINQYI
GKEILLKEIPDKDTVNNLKQEFSEKIVTTPEIKETKGVQLNKEIMKLHINAGKKTKMRPV
DIVGTLCNLKGMTAADIGIINILDVSTFVEILNNKGELVFKELQKTPIKGRLRKVSKTVD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagcttttagtgattataaattgagtagtgaaatattaaaagcaataagcatg
ttgaattttaaaagtcctacaaaggttcaagaaaaggttataccagctgttttagagcaa
aaggacattatagtaaaatcccaaacaggaagtggaaagacagctgcatttgctgtcccc
atttgtgaattggtagaatgggatgaaaataaacctcaggcattagtgattacacctaca
agagaacttgctattcaggtgaaggaagatatgtttaatttaggtagatttaaaaggctt
aaagtatcagcgatttacggcaagtctcccttctataatcaagaaaaggaactcaaacaa
aaaacgcatgtagtggttggaacaccgggacgtatcatagaccatatcgaaagaaataca
tttgacacatcaaaaataaagtatcttgtaatagatgaagctgatgaaatgctccatatg
ggatttattgaacaaatagagactatagtatcaagtctatcgaaggaacgtgttacggtg
ctactatcagcaacaatgccaagagatatagaggctctatgcaacaaatacatgaaagag
cctatacgtgttgaaatagaggagcaaaatccaacggcagaaagggtgcatcaggagagg
tatgatgtagaccgagtaaataagataaaccttttaagagatataacaatagtagaaaac
ccggatagctgtatagtattttgtaatacaaagcaaaaggtggatgaggtatataataaa
ctttcacttttcaagtattcctgtgaaaagattcatggaggaatggagcagcgtgacaga
ttaagagtaatgaataacttcaagcggggctatttcaggtatctgatagctacagatgtt
gcagccagagggatagatatagacaacatttcacttgtaattaattatgatattccacaa
gatggtgaaacttatgtacacaggatagggagaaccggtcgtataggcagggatggcaaa
gctattacttttgtaacaaaagatgaaagtaagtatctgaatgatataaatcaatacatt
ggtaaagaaattttattaaaagaaatacccgataaagatactgtgaataatttaaagcag
gaattttctgagaaaatagttactacgcctgaaattaaagaaacaaaaggtgtgcaactt
aataaagagattatgaaattacatatcaatgcaggaaagaaaaccaagatgaggccggtg
gacatcgttgggacactctgtaatttaaaaggtatgacagcggcagatataggtatcatc
aatatacttgatgtatctacgtttgtagaaatattaaacaataaaggtgagctggtcttt
aaggaattacagaaaacacctataaaaggaagacttcgcaaggtaagcaaaacggtggat
gaatga
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