Clostridium ljungdahlii: CLJU_c03110
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Entry
CLJU_c03110 CDS
T01276
Symbol
uvrB
Name
(GenBank) excinuclease ABC, subunit B
KO
K03702
excinuclease ABC subunit B
Organism
clj
Clostridium ljungdahlii
Pathway
clj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLJU_c03110 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clj03400
]
CLJU_c03110 (uvrB)
DNA repair and recombination proteins [BR:
clj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLJU_c03110 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLJU_c03110 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
ADK13395
UniProt:
D8GLJ9
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All DBs
Position
316516..318498
Genome browser
AA seq
660 aa
AA seq
DB search
MGVFKIHSKFKPTGDQPKAIDSIADGVLKGNKFQTLLGVTGSGKTFTMANIIEKVQKPTL
VLAHNKTLAAQLCSEFRDFFPDNSVEYFVSYYDYYQPEAYIPQTDTYIEKDASINDEIDK
LRHSATSALLERKDVIVVASVSCIYGLGNPEEYKKLTLSLRPGMIKNRDEVLKKLVEIQY
ERNDINFVRGTFRVKGDIVDIFPAASTDHAIRVEFFGDEIDKIREFDVLTGDTIGFRKHA
NIFPASHFATSREKMELAIEKIEEELEHRLKELTSQDKLLEAQRLKQRTNFDIEMMREVG
YCSGIENYSRIMDGRAKGSPPQTLIDYFPDDFLLFIDESHVTLPQVKAMYAGDRSRKDSL
VEYGFRLPSAYDNRPLKFQEFEKKINQVVFVSATPADYELEHSENVAEQILRPTGLLDPE
IIVKPIKGQIDDLYNSIQKTISRGYRILVTTLTKKMAEDLTDYFKDMNVKARYLHSSIAT
IDRMKIIRDLRKGEFDVLVGINLLREGLDIPEVALVAILDADKEGFLRSERSLIQTIGRA
ARNSESKVIMYADVITKSMDKAISETKRRRKIQIEYNKKNGIVPKTINKAIREVIESTMV
LEEKEEYNSLEEAVKADNEKIDELIEAHERQMKTAAKELRFEEAAKLRDAILKLKKQKNK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgggagtttttaaaatacattctaagtttaaacctactggagatcaacccaaagctata
gatagtatagcagatggtgttttaaaaggaaataaatttcaaacattacttggagtaact
ggatctggtaagacttttactatggcaaacataatagaaaaagtacaaaaacctacacta
gtgcttgcacataataaaactttggcagcacagttatgttcggaattcagagatttcttt
ccagataattctgtagaatattttgtatcatattatgattattatcaaccagaagcatat
atacctcagacagatacttatatagaaaaagatgcatctataaatgatgaaattgataaa
ttaagacattctgctacttctgcactcctggaaagaaaagatgtgattgtagtagcgtca
gtatcttgtatttatggacttggaaatcctgaagaatataaaaaattaactttgtctcta
aggccgggaatgataaaaaatagagatgaagtcctaaaaaaattagtagaaatacagtat
gaaagaaatgatataaattttgtaagagggacctttagggtaaaaggggatatagtggac
atatttccagcagcatctacagatcacgctataagggtagagttttttggagatgaaatt
gataagataagggagtttgatgtgctcacaggagataccattggatttagaaaacatgca
aatatatttccagcatcccattttgccacttcaagagaaaaaatggaattagccatagaa
aagatagaagaagaattagaacacagacttaaagaacttacatctcaggataaattgctt
gaagcacaaaggttaaaacagagaactaattttgacatagaaatgatgagagaagtagga
tattgcagtggaattgaaaattattctagaataatggatggaagagctaagggaagtcct
ccacaaacccttattgattattttccagatgattttttgctttttatagatgaaagtcat
gttactcttcctcaggtaaaagccatgtatgcgggagatagatccaggaaagattcatta
gtggaatatggttttaggcttccttctgcctacgataacagacctttaaaatttcaagaa
tttgaaaagaagataaatcaggttgtgtttgtgagtgctacacctgcagactatgagtta
gaacattccgaaaatgtggcagaacaaatattaagacctacaggacttttagatcctgaa
attatagtgaaaccaattaaaggacaaatagatgatttgtataatagtatacaaaaaact
atatcaagaggatataggatacttgtcactacacttactaaaaagatggcagaagattta
acagattattttaaagacatgaatgtcaaggcaagatatcttcattccagtatagctact
atagataggatgaagataataagggatttgagaaaaggagaatttgacgtcttagtggga
attaatcttctaagagagggacttgatatacctgaagttgcattagttgcaattttagat
gcagataaggaaggatttttaagatcagagagatctcttattcaaactataggaagggct
gcaagaaactctgaaagcaaagttataatgtatgccgatgttattacaaaatctatggat
aaagctataagtgaaactaaaagaagaagaaaaatacaaattgagtataataagaagaat
ggaatagttccaaaaacaattaataaggcaattagagaagttatagagtcaactatggtt
ttggaagaaaaagaagaatataatagtttagaagaagcagtaaaggcggacaatgaaaaa
atagatgaactcattgaagctcatgaaagacaaatgaaaacggcagcaaaagaacttaga
tttgaagaagctgctaaactcagagatgcaatacttaagttaaaaaaacagaaaaataaa
taa
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