Campylobacter lari RM16712: UPTC16712_0106
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Entry
UPTC16712_0106 CDS
T03556
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
clm
Campylobacter lari RM16712
Pathway
clm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UPTC16712_0106 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clm03021
]
UPTC16712_0106 (rpoA)
03400 DNA repair and recombination proteins [BR:
clm03400
]
UPTC16712_0106 (rpoA)
Enzymes [BR:
clm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UPTC16712_0106 (rpoA)
Transcription machinery [BR:
clm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UPTC16712_0106 (rpoA)
DNA repair and recombination proteins [BR:
clm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UPTC16712_0106 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DNA_pol3_a_NII
Flavodoxin_1
Motif
Other DBs
NCBI-ProteinID:
AJD05654
LinkDB
All DBs
Position
93487..94500
Genome browser
AA seq
337 aa
AA seq
DB search
MRHITTSAYTPTEFSIENISDTVAKVSAWPFEIGYAITLAHPLRRLLYSSTVGFAPTGVK
IKGVAHEFDSMRGMLEDVALFIINLKKLRFKLKTDSEKEIVTFSFKGPKEICGKDLDNEV
VEVVNADSYLATINEDADLEFTLIIEKGIGYVPSEEIQNFLDPEFIALDAFFTPVKHAVY
DIEKVLFEDNPDYEKVVFTITTDGQISPSDAFKNALEAMYKQLSVFDKITNAQSVVRSQT
PNNEVEHVKLLQNITELNLSARSFNCLEKANVVYIGELALMSVSELADLKNLGKKSLDEI
KSVMESIGFPIGNSKLSDSAKETLKRKITELKAQNEG
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgagacatattacaacttctgcttatacaccaacagagtttagtattgaaaatatcagt
gatacagtagcaaaagtaagtgcatggccttttgaaatcggctatgctattactttggcg
catcctttgcgtcgtttgctttattcaagcacagtaggttttgctccaacaggagttaaa
atcaaaggcgtagcacatgaatttgatagtatgcgtggtatgcttgaagatgtagcattg
tttattatcaatctaaaaaaattaagatttaaactaaaaacagattctgaaaaagaaatt
gtaacctttagttttaaaggaccaaaagaaatttgcggaaaagacttagacaatgaagtt
gttgaagttgtgaatgcagatagctatcttgcaacgattaatgaagatgcggatttagaa
tttactttaatcattgaaaaaggtataggttatgtgccttctgaagaaatccaaaatttc
ttagatcctgaatttatagcacttgatgcattctttactccggtaaaacatgcggtttat
gatatagaaaaagtgctttttgaagataatccagattatgaaaaagttgtttttacaatc
acaactgatggtcaaatttcaccaagtgatgcttttaaaaatgctttagaagcaatgtat
aaacaattatcggtgtttgataaaatcactaatgcacaaagcgttgtaagaagtcaaaca
ccaaataatgaagtagaacatgtaaaattacttcaaaatataactgagttaaatttaagt
gcaagaagttttaactgcttagaaaaagcaaatgtggtttatatcggtgagcttgcttta
atgagtgttagtgaacttgcagatttaaaaaatcttggtaaaaaatctttagatgagatt
aaaagcgtaatggaatctataggttttcctataggaaattcaaaactcagtgatagtgca
aaagaaacgctaaaaagaaaaattacagaattaaaagcacaaaatgaaggataa
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