Columba livia (rock pigeon): 102097259
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Entry
102097259 CDS
T02912
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
clv
Columba livia (rock pigeon)
Pathway
clv03015
mRNA surveillance pathway
clv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102097259 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
102097259 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clv03019
]
102097259 (PABPC1L)
03041 Spliceosome [BR:
clv03041
]
102097259 (PABPC1L)
Messenger RNA biogenesis [BR:
clv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102097259 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
102097259 (PABPC1L)
Spliceosome [BR:
clv03041
]
Complex C
Other components
Complex C specific factors
102097259 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_3
ATP-grasp_2
DUF6262
Motif
Other DBs
NCBI-GeneID:
102097259
NCBI-ProteinID:
XP_021138845
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPVDAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGYFLPPIPQPQTRATF
YSPSPVVPVRPATRWSAQPSRPPPAYPAATPILRAAVPPRRLLTNISTMRQASTQVPRVP
PQAQRVANIGTQTVSARVPSSPTLPRGTPQYKYSSSVRNVQPMGHMPPVVAPQVGEPAVH
VQGQEPLTASVLAAAPPQEQKQMIGERLYPLIYAIHPSLAGKITGMLLEIDNSELLLLLE
SPDSLRSKCTPPWEQLTFSPPCALCCKMEEAVAVLQAHQVTKTSHKNSTVAFLQ
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggccctggctatccgttagcctctctctatgtgggggacctccacccg
gacgtgaccgaagccatgctttacgagaagttctcacctgctgggcccatcatgtccatc
cgagtctgccgggatgttgccacacgccgatctctgggctatgcctacattaacttccag
cagcctgtggatgctgagcgagccctggacaccatgaactttgaggtgatcaaaggccgt
cccatccgcatcatgtggtcccagcgggaccctggcctccgaaagtctggggtgggaaac
gtctttatcaagaacctggatgactccattgataacaaagccctgtacgacacattctcc
gccttcggaaacatcctgtcatgcaaggtggtttgtgatgaaaatggatctcgtggctat
ggctttgttcactttgagactcacgaggcagcgactcgagccattgagaccatgaatggg
atgttgctcaacgaccggaaggtgtttgttggtcacttcaaatcccgcaaagagcgcgag
gcagagtttggggcgaaggcgatggagttcaccaacgtctacatcaaaaactttggggat
gacatggacgacgacagactgcgggaaatcttctccaagtttggaaaaacgctaagtgtc
aaagtcatgatggacagcactggccgctcaaagggctttggattcgtcaactttgagaag
cacgaagaagctcagaaggcggtggccgacatgaacgggaaggagatcaacgggcggata
gtgtacgtgggccgggcccagaagcgcctggagcgccagagcgagctgaagaggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtacgtgaagaac
ctggatgatgggatagatgacgataggctgaggaaggagttctctccctatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttgggtttgtatgtttt
tcctccccagaagaggctaccaaggccgtgactgaaatgaacgggaggatcgtcagcact
aagcctctctatgttgcacttgctcaaaggaaagaggagcggaaagcaatcctcaccaac
cagtacatgcagagattagccaccctgagggctctgcctggccctctcctgggctccttt
cagccccccccggggtactttctaccccctattccccagccacaaaccagagctaccttc
tacagccccagcccagttgtcccagtccgtcctgccactcgctggagtgcgcagccctcc
cggcctcccccagcatatcctgcagctactcccatcctgagggctgctgtgccaccccgg
cgcctgctcaccaacatcagcaccatgagacaggcctccacgcaagtgccccgcgtgcca
ccccaggcccagagagtggccaacatcgggacgcagacggtcagcgcccgggtgccctcc
tcacccaccctgccacggggcaccccgcagtacaagtactcctcgtccgtcaggaatgtc
cagcctatggggcacatgccacccgtggtggccccgcaggtgggagaacccgctgtgcat
gtgcaggggcaggagccgctgacagcatccgtgcttgcagcagcccctcctcaggagcag
aagcaaatgataggtgagcgcctctaccctctgatctacgcgatccatccctcactggcc
ggcaagatcactgggatgctgctggagatcgacaactcagagctgctgttgctcctggag
tcccccgactccctgcgctccaagtgcactcctccatgggagcagctcaccttctccccc
ccttgtgctctctgttgtaagatggaggaggcggtggctgttctccaagcacaccaggtc
accaagacatcacacaagaacagcaccgtggcgttcctgcagtga
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