Pacificitalea manganoxidans: CBW24_00830
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Entry
CBW24_00830 CDS
T05128
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cmag
Pacificitalea manganoxidans
Pathway
cmag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBW24_00830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cmag03019
]
CBW24_00830
03016 Transfer RNA biogenesis [BR:
cmag03016
]
CBW24_00830
Enzymes [BR:
cmag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBW24_00830
Messenger RNA biogenesis [BR:
cmag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBW24_00830
Transfer RNA biogenesis [BR:
cmag03016
]
Prokaryotic type
tRNA degradation factors
CBW24_00830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
HTH_Crp_2
MarR
Motif
Other DBs
NCBI-ProteinID:
ATI40698
UniProt:
A0A291LW47
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All DBs
Position
176242..178545
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AA seq
767 aa
AA seq
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MSQLPTKAEILGWISDHPTQTSKRDIAKAFGIKGASRIDLKRILKELEDEGHLEKRRKTY
RDPDRLPPVSVLQMLAPDDDGDLFAKPLEWHGDGPAPRVLWVAREADPALGAGDRVLGRL
VEVKGEDYQYEGRLIRKIGHNPKRVLGLYRAGTEGGRIVPIDKGSDSEWHVPAGNTHGAQ
DGELVEAEQASPRSRMGLPVARITDRLGDPGAPRAVSLIAIHQHGIPDAFPDAVIEAADK
ARPAGMKGREDLRDLPLVTIDPSDARDHDDACFAHADDDPKNPGGHIVWVAIADVAHYVT
PGSPLDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQLDAGGELIG
YQFKRGLMRSQASLHYEEVQAAMDGQPSDRTAPLMEDVIRPLYAAYHAARAAREKRQPLD
LDLPERRIELADDGTVTSVNFKDRLDAHRLIEEFMILANVAAGKTLVAKRRPLLFRVHEE
PSPEKLDALRETAQASGLTLAKGQVLHTSHLNRLLNAAAGTEMAELINLSTLRSMTQAYY
SPENFGHFGLALGTYAHFTSPIRRYADLIVHRALITAHGWGKDGLSPDEIEILDETAKHI
SETERRSMTAERDTTDRYLASYLSERVGNEFEGRISGIARFGVFVKLDGTGADGLVPMRA
LGREYFHHDPETQTLMGADTGRVISLGQRVTVRLAEAVPVTGGLLLDLLAIEDQQVAGGA
SARRGGPKRFGGKGKPRGGGAGQRKPAKSRAKAAKTKRKVIRKRRDS
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcttccgaccaaggccgaaattctcggctggatctccgatcatcccacccag
acctcgaaacgcgatatcgcgaaggctttcgggatcaagggcgcgtctcgtatcgacctc
aagcgcatcctgaaggagctggaggacgaagggcatcttgaaaagcggcgcaagacctat
cgcgatccggatcggctgccgccggtgtcggtgctgcaaatgctggccccagacgatgac
ggcgatctgttcgcaaaaccgctggaatggcacggtgacggccccgcgccgcgtgttctg
tgggtcgcgcgcgaagctgatcctgcgctgggcgcgggggatcgcgttctgggccgtctg
gtcgaggtcaaaggcgaagattatcaatacgaaggtcgcctgatccgcaagatcggtcac
aacccgaaacgggtgctggggctgtatcgggccggaaccgagggtggccgcatcgtgccc
atcgacaagggcagcgacagtgaatggcacgttcccgcgggcaacacgcacggcgcgcag
gatggcgaattggtcgaggccgaacaggctagcccccggtcccgcatgggcctgccggtg
gcgcggatcacggacaggctcggtgatcccggcgcgccgcgagcggtatcgctgatcgcc
atccaccagcacggcattccggacgcctttcccgatgcggtgatcgaagcggctgacaag
gcccgccccgccgggatgaaggggcgcgaggatctgcgcgatctgccgctggtcaccatt
gatccctcggacgcgcgggatcacgacgacgcctgttttgcccatgccgatgacgatccc
aaaaatccgggcggtcatatcgtctgggtcgcgatcgccgatgtcgcacattacgtcacg
cccggatcgccgctggatcgggaggcccgcaagcgcggcaactccacctatttccccgac
cgcgtcgtgccgatgctgcccgaccggctgtccggggatctgtgttccctgcacgaaggc
gtgccacgcgcctgtatcgccgtgcggatgcagctggatgccggcggcgagctgatcggc
tatcagttcaaacgcgggctgatgcggtcacaggcctctttgcactacgaagaggtacag
gccgcgatggacggccagccctcggaccgcaccgcgccgctgatggaggacgtgatccgc
ccgctttacgcggcctatcatgcggcccgcgctgcccgtgaaaaacgccagccgctagat
ctggatctgccggagcggcggatcgaattggccgatgacggcactgtcacatcggtcaat
ttcaaggatcggctggatgcccaccgattgatcgaggaattcatgatcctcgccaatgtc
gcggcgggcaagacactggtggcaaagcgccgtccgctgttgttccgtgttcacgaagag
ccgagcccggagaagctcgacgcgctgcgcgagacggctcaggcctctggcttgacgctg
gccaaggggcaggtgctgcatacctcgcatctgaaccgtttgctgaatgccgctgcaggc
acggaaatggcggagcttatcaacctgtcgacgctccgctcgatgacgcaggcctattat
agccccgaaaatttcgggcatttcgggctcgctctggggacttacgcgcatttcacctcg
cccatccggcgttacgccgacctaatcgtgcaccgggcgctcatcaccgcgcatggctgg
ggcaaggacgggctatcgccggacgagatcgagattctggacgaaacggccaaacatatc
tcggagaccgagcgccgttcgatgacggcggaacgggacaccaccgaccgctaccttgcg
tcctatctgtccgaacgggtcggcaacgaattcgaaggccggatcagcggtatcgcgcgg
ttcggcgtgtttgtgaagcttgacggcaccggcgccgacgggttggtgccgatgcgggcg
ctgggccgggaatatttccatcacgacccggaaacacagacccttatgggggcggatacg
gggcgtgtgatctcgctcgggcagcgggtgacggtgcgcttggcagaggcggttccggtg
accggcggtctgctgctggacctgcttgccatcgaggatcagcaggtcgctggcggggca
tcggcgcgacgcggcggacccaagcgtttcggcggtaagggcaagccgcgcggcggcggt
gccggtcagcgcaaaccggcgaaatcccgcgccaaagctgcgaaaaccaagcgcaaggtg
atccgcaagcggcgcgatagctga
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