Carnobacterium maltaromaticum: BN424_3448
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Entry
BN424_3448 CDS
T02342
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cml
Carnobacterium maltaromaticum
Pathway
cml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN424_3448 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cml03021
]
BN424_3448 (rpoB)
03400 DNA repair and recombination proteins [BR:
cml03400
]
BN424_3448 (rpoB)
Enzymes [BR:
cml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN424_3448 (rpoB)
Transcription machinery [BR:
cml03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN424_3448 (rpoB)
DNA repair and recombination proteins [BR:
cml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN424_3448 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CCO12869
UniProt:
K8E7I8
LinkDB
All DBs
Position
complement(3432601..3436032)
Genome browser
AA seq
1143 aa
AA seq
DB search
MFKDISPIADFAGNLSLEFVDYQLYSPKYTVEEARSHDANYSAPLHVKLRLQNRETGEVK
DQEVFFGDFPLMTDMGTFIINGAERVIVSQLVRSPGVYFHGKVDKNGKQGFGSTVIPNRG
AWLEYETDAKDLSYVRIDRTRKIPLSVLVRALGFGSDDQILEIFGDNESLRLTLEKDLHK
NANDSRVEEALKDVYERLRPGEPKTADSSRSLLNARFFDPKRYDLANVGRYKVNKKLNLK
TRLFNQTLAETLIDPETGEIIAEKGTLLDRDMINKLSPFIDAGINSVTLYPSDEGVVPEP
FTIQVVQVVSPKDPDRIVNVIGNGDVSTDIKNVTPADIISSMSYFFNLQEGIGNVDDIDH
LGNRRIRSVGELLQNQFRIGLSRMERVVRERMSIQDVATVTPQQLINIRPVVAAIKEFFG
SSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGP
NIGLINSLSSYAKINKFGFIETPYRRVDRETGKVTKHIDYLTADEEDHYVVAQANSVLLE
DGSFESDIVMARFISENLEVPISRVDYMDVSPKQVVAVATSCIPFLENDDSNRALMGANM
QRQAVPLIHPQAPLVGTGMEYISAHDSGAALICRNPGVVEYVDAKEIRIRQDNGALDKYS
ITKFRRSNAGTCYNQRPIVALGDRVDASEILADGSSMENGEMALGQNVLVAFMTWEGYNY
EDAIIMSERLVKDDVYTSVHIEEYESEARDTKLGPEEITREIPNVGDDALKDLDEFGIIR
IGAEVRDGDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVK
IFTREAGDELSPGVNMLVRVYIVQKRKINEGDKMAGRHGNKGVVSRIMPEEDMPYLPDGT
PVDIMLNPLGVPSRMNIGQVLELHIGMAARQLGIHIATPVFDGASEEDVWATVQEAGMAN
DAKTILYDGRSGEPFDNRISVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFG
GQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEKIPKPGVPESFRVL
VKELQALGLDMKVLDANDEEIELRDLDDDDDVVNIDALSKYAEEQEKIRAEAAEKERLAN
EEN
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaagacatctctccaatcgcagatttcgctggaaacctatcattagaatttgtt
gattatcagttgtacagcccaaaatacactgttgaagaagctagaagtcatgacgcaaat
tactctgcaccattgcatgtgaagttacgtctgcaaaatagagaaacaggcgaagtaaaa
gaccaagaagtattctttggtgatttcccactgatgacagatatgggaacgttcattatc
aatggagctgaacgtgttatcgtttctcaattagttcgttcaccaggggtttatttccat
ggtaaagtcgacaaaaacgggaaacaaggatttggttcgacagttattcctaaccgtggc
gcatggttagaatatgaaacagatgcaaaagatttatcgtatgttcgtattgaccgtacg
cgtaaaattcctttatctgttttagttcgtgctttaggatttggatcagatgatcaaatt
ctagaaatcttcggtgacaatgaaagcctacgtttaaccttagaaaaagacctacacaaa
aatgccaatgattcacgtgttgaagaagccttgaaagatgtttacgagcgtctacgtcca
ggtgagcctaaaacagcagatagttcaagaagtctgttaaatgctcgtttctttgatcca
aaacgttatgatttagccaatgttggtcgttataaagtcaacaaaaaattaaatctaaaa
acacgtctatttaaccaaactttagcagaaacattaattgatcctgaaacaggagaaatt
attgctgaaaaaggtacgttattagatcgtgatatgatcaataaattaagtccatttatc
gatgctggaattaatagtgtaacactttatccatctgatgaaggggttgttccagagcct
ttcacaattcaagtggtacaagttgtttcaccaaaagatccagatcgcatcgttaatgta
attggaaatggtgatgtttcaacagatattaaaaacgtaacgcctgctgacatcatttca
tcaatgagttacttctttaacttacaagaaggaatcggcaacgtagatgatatcgatcat
ttaggtaatcgtcgtattcgttcagttggagaattactacaaaatcaattccgtattggt
ttatctcgtatggaacgtgtggttcgtgaacgtatgtctattcaagatgtagcaactgta
acgccacaacaattgattaatattcgtcctgttgtagcagcaatcaaagagttctttggt
tcttcacaactgtctcagttcatggatcaaaccaacccgcttggtgaattgacgcataaa
cgtcgtctttcagccttaggacctggtggattaacacgtgaccgtgctggatatgaagta
cgagatgtacattattcccattatggccgtatgtgtccaattgaaacacctgagggtccg
aatatcggactgattaacagcctatctagttatgcaaaaattaataaatttggtttcatt
gaaacgccttatcgtcgtgttgatcgcgaaacaggtaaagtaacgaaacacatcgattac
ttgactgctgatgaggaagatcattatgttgtagcgcaagcaaactcagtcttattagaa
gatggtagctttgaaagtgatattgtaatggctcgttttatctctgaaaacttagaagta
ccaattagccgtgtcgattatatggatgtttctcctaaacaggtagttgcagttgcgact
tcatgtattcctttcttggaaaacgatgatagtaaccgtgccctaatgggagccaacatg
caacgtcaagctgtacctttgattcacccacaagctccacttgttggaacagggatggaa
tatatctcagctcatgattcaggtgctgcattaatttgtcgcaatcctggagtagttgaa
tatgttgatgcgaaagaaattcgtattcgtcaagataatggtgcgttagataaatattca
atcactaaattccgtcgttcaaatgccgggacttgttacaaccaacgcccaatcgtagct
ttaggtgaccgtgttgacgctagcgaaattctagcagatggttcttcaatggaaaatggc
gagatggctctaggccaaaacgtcttagtagccttcatgacttgggaagggtataactat
gaagatgcgatcatcatgagtgagcgcctagttaaagatgacgtgtacacttctgtccat
attgaagaatatgaatcggaagcacgtgatacaaaattaggacctgaagaaattacccgt
gaaattccaaacgtcggagacgatgctttgaaagacttagacgaattcggaattatccga
attggtgctgaagtacgcgatggcgatttattagttggtaaagttacacctaagggagtg
acagaattatcagctgaggaacgtttactacacgcaatctttggtgaaaaagcacgtgaa
gttcgtgatacatcacttcgtgtaccacatggtggcggcggaattgttcatgatgttaag
atctttacacgtgaagcaggagatgaattatctccaggtgtaaacatgttagttcgtgtt
tatatcgtgcaaaaacgtaaaatcaatgaaggggataaaatggcgggacgtcacggaaat
aaaggggtcgtttcacgcattatgcctgaagaagacatgccttatttaccagacggcaca
ccagttgatatcatgttaaacccacttggggtaccttcacggatgaatattggacaagta
cttgaattacacatcggaatggctgctcgtcagctaggcattcacattgcaacaccagtc
tttgatggagcaagtgaagaagatgtatgggcaactgttcaagaagctggtatggccaat
gatgcaaaaactattttgtatgatggacgttcaggagaaccatttgataaccgtatttca
gttggaattatgtatatgattaaattagcccacatggttgatgataagttacatgctcgt
tcaactggaccttactcactagttacacaacaaccattgggtggtaaagctcaatttggt
ggacaacgtttcggagagatggaagtttgggcactggaagcgtatggggcagcttatacc
ttgcaagaaatcttaacttacaaatcagatgacgttgttggtcgtgtgaaaacttatgaa
gcaatcgttaagggtgaaaaaattcctaaaccaggagttcctgaatccttccgcgtatta
gttaaagagttacaggccttaggattggatatgaaagtattggatgctaatgatgaagaa
atcgagttacgtgatttagatgatgatgatgatgttgtcaacattgatgctttaagcaaa
tatgctgaagagcaagaaaaaatccgtgctgaagcagctgaaaaagaaagactagcaaac
gaagaaaactaa
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