Cyclobacterium marinum: Cycma_4018
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Entry
Cycma_4018 CDS
T01592
Name
(GenBank) SNF2-related protein
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
cmr
Cyclobacterium marinum
Brite
KEGG Orthology (KO) [BR:
cmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmr03021
]
Cycma_4018
Transcription machinery [BR:
cmr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Cycma_4018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Tudor_RapA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEL27726
UniProt:
G0J793
LinkDB
All DBs
Position
4851781..4854609
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AA seq
942 aa
AA seq
DB search
MMDFYPNQRWASEGEPDLGVGVIIEAKKNRVKVSFPSTGETRQYAIDNAPLRRVIFKPGD
TVKDVNKRSFVIERVQVNGELVVYIGNQGTLSEADLGDVSITHGVDDRLLLGEVDKPAVF
ALRRKTLAYDHKRRIAPINGFVGGRIDLIPHQLYIAHEVSSRYSPRVLLSDQVGLGKTIE
ACLIMHRLLLSGQASRIIILVPDSLIHQWFVEMLRRFNLWFHIFDEERCEALDESAPEGN
PFLDDQLVLCSTTFLSGSQKRARQAITASWDMLVVDEAHHLSWSLENISPEYAIVEALSK
VAKALLLLTATPEQLGAESHFARLRLLDPERYNDYDVFVNESQDHTAIANIVEKLASGEK
ADIKDKALLKSLFGDKRIAKLEEQGRIGENQLIEDLLDQHGPGRVVFRNTRAAMSGFPTR
EVQLIPLKTETSQQEWVKRMSAEFIMDKGSGRESKDPFHFLKDPRVIWLVHLLEELNPNK
LVLICRSKMKVLALEKALRNLSSAKVGVFHEDLNIVQRDRNAAWFAEESGARVLLCSEIG
SEGRNFQFAHHLVLFDLPLHPELLEQRIGRLDRIGQAEKIRIYVPFLKGSPQEILARWFH
EGLNAFEENIEGGNQIGELFGERLFELAMTSMKHDIFADLESLIRETASYQRALKQTLAN
GRDRLLEMNSFRPKVAMELVDKIHEADKDLKLENYMSEVFEHFRVEMEDLAPRTYWLRPS
KANHTAFPSIPEKGISITFDRKRALSREDIDFISWDHPMVTGAIDMVLGMGTGAASFGRL
KGTTKTGILMEVIFVLETSGKEGVYVDRFLPNTPLRVVVNHLGEEVTDSYPVGLLNKQLV
SGEITELIGNDRFVDEIFPEMIKTAEEIADQMKDKEIDSGLQYMNHTLDHEIGRLAYLYK
RNNAIRPDEIRTALEQKNELAELITNARIRIDAIQLIREGVN
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgatggatttctatcctaatcaaagatgggcaagtgaaggtgagccggacttaggtgta
ggtgtaattattgaagcaaaaaaaaatcgagtgaaagtcagtttccctagcacaggggag
acgagacagtatgcaatagataatgcacctttgcgcagggtgatatttaaacccggagat
actgtaaaggatgtcaacaaacggtcgtttgtcattgaacgggtgcaagttaatggtgaa
cttgttgtgtatataggtaatcaaggcactttatcagaagcagatttaggagacgtttcc
ataactcatggggttgatgatagacttttactaggggaagtagataaacctgcggttttt
gccttacgcaggaaaacattggcgtatgaccataaacgtaggattgcaccgataaatggt
tttgtaggaggtcgaatagatcttattccccatcaactttatattgcccatgaagtaagt
tcaaggtattcgcccagagtattactgtccgatcaggtaggccttggcaaaaccattgaa
gcctgtcttattatgcaccggttattattaagtggtcaagcttcgcgaataatcatattg
gttccggattcattgatccaccagtggtttgtggagatgttaagacgcttcaatttatgg
tttcatatttttgatgaagaaagatgtgaggcattggatgaaagtgctccggagggaaat
ccttttttggatgatcaactggtactctgtagcactacctttttatcaggatcacaaaag
agagcgaggcaagctatcactgcaagctgggatatgctggtagtagacgaggcgcatcat
ttgtcatggtctttggaaaatatcagccctgagtacgctattgtagaagctttaagtaaa
gttgcaaaagcgcttttactattaaccgctacccctgaacagcttggtgccgaaagccat
tttgctcgattaagattgttagatccagaaaggtataatgattatgatgttttcgtcaat
gaatcacaagaccatactgccattgccaacattgtggaaaaattggcatcaggagaaaag
gcagatataaaggacaaagccttattaaagagtttatttggcgataaaagaattgcgaaa
ctagaggaacaagggcgaataggcgaaaatcaactaattgaagatttattggatcaacat
ggccccggtagggtagtgtttagaaatacccgggctgcaatgagtggttttccaaccaga
gaagttcaattaattcctttgaaaaccgaaacaagtcagcaagaatgggttaagcgcatg
tcagctgaatttataatggacaaaggctctggaagggaatcaaaagatccttttcatttt
ttaaaggatcctcgggtgatatggctggtacatttattggaagagctaaatcctaataaa
ttggttttgatttgccgatctaaaatgaaagttttggcattagaaaaagccttgcgaaac
cttagcagtgcaaaagtaggggtttttcatgaggaccttaatattgtacaaagggatcgc
aatgctgcttggtttgctgaagaaagtggtgcaagggttttattgtgttccgaaataggt
agtgaagggagaaactttcaatttgcgcatcatttggtattgtttgatttaccattgcat
cctgagctactggaacaacgaataggacggttagatcggataggacaagcagaaaaaatt
cgtatttatgtgccctttttaaaaggcagtccccaagaaattttagcacgatggtttcat
gaaggtttgaatgcttttgaagaaaatatagaaggtggaaaccagattggagaattgttt
ggagagcggttatttgagctagcaatgacttctatgaaacatgacatttttgccgatcta
gaaagcttaataagggagactgcaagttaccaaagagcacttaagcaaactttagctaat
ggtcgagacaggttacttgaaatgaactcttttagacctaaggttgctatggaattggta
gacaaaattcatgaagcagacaaggatttaaaacttgaaaactatatgtctgaggttttt
gaacattttcgagttgagatggaagatttggctcctcgtacttattggttgcgtccgagt
aaagccaatcacacagcatttccatctatacccgaaaaggggatttcaattactttcgat
cgaaaacgggccttgagtagggaagacattgattttatcagttgggaccatcccatggtg
acaggggcgattgatatggtgctgggaatgggtactggagctgctagttttgggcggctt
aagggtacaacaaaaaccggaatacttatggaagtaatttttgttctcgaaacttcagga
aaagaaggtgtatatgtggatcggtttcttcccaacacacctttgcgtgtagtcgtaaat
catttgggagaagaagttaccgatagttatccagttggtttattaaacaagcaattggtg
tccggagaaatcaccgagttgataggaaatgatagattcgttgatgaaatatttcctgaa
atgataaagactgcagaagaaatagccgaccaaatgaaggacaaagaaattgattcagga
cttcaatacatgaaccataccttagatcatgaaattgggagattggcttatttgtataaa
agaaataatgccataagaccggatgaaataagaacagctttggagcagaaaaatgagcta
gctgagttgattacaaatgcaagaataagaatcgatgccattcaattgattcgagaagga
gtaaattaa
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