KEGG   Chelonia mydas (green sea turtle): 102941188
Entry
102941188         CDS       T02989                                 
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy03008  Ribosome biogenesis in eukaryotes
cmy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102941188 (XRN2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102941188 (XRN2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmy03021]
    102941188 (XRN2)
   03019 Messenger RNA biogenesis [BR:cmy03019]
    102941188 (XRN2)
   03009 Ribosome biogenesis [BR:cmy03009]
    102941188 (XRN2)
   03016 Transfer RNA biogenesis [BR:cmy03016]
    102941188 (XRN2)
Transcription machinery [BR:cmy03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102941188 (XRN2)
Messenger RNA biogenesis [BR:cmy03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     102941188 (XRN2)
Ribosome biogenesis [BR:cmy03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    102941188 (XRN2)
Transfer RNA biogenesis [BR:cmy03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    102941188 (XRN2)
SSDB
Motif
Pfam: XRN_M XRN_N
Other DBs
NCBI-GeneID: 102941188
NCBI-ProteinID: XP_037752169
LinkDB
Position
3:199106977..199192340
AA seq 958 aa
MGVPAFFRWLSRKYPSIIVHSVEEKPKECNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVEGAEEKQRIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCSQFGHEVKDCQGLPREKQGEHDQFADCPPGSEQE
FIFIRLSVLREYLEKELTMASLPFTFDIERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEENFRRRQKE
KRKRMKRDQPSFIPGGQFSPQALGRGNRSSPQAISNPRQTAYEMRMQDKQNLTPSTSPNT
SFTSDGTPSPAGGIKRKAEDSDSEPEPEDNIRLWESGWKQRYYKNKFDVDVSDEKFRRKV
VQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADLPSDFEKGTKPFRPLEQL
MGVFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKFAWQGVALLPFVDERRL
RAALEEVYPDLTPDENRRNSLGGDVMFVGKHHLLCDFVLELYKSSSTEPVDIPPELCHGI
QGKLTLNENAVLPDQTVESPVPLLRDLTQNSSISIDFKDPQFQEDFVFKAVVLPGAKKPA
PVLKPGDWEKTNNNGRPWRPQLGFNRDRRPVHLDQSAFRTLGHAMSRERGQSGSGVYSNA
APLGAYQGNPYRPLLGGQPQIPKLLSNLRPQESWRGPTPLFQQPPQRYERNSGAAPLLSW
NRMLQSQGAAFQQNQYQGLGGPMNYPHRPDDRMDRGRQGYGPGRPYPLPPPSGRYNWN
NT seq 2877 nt   +upstreamnt  +downstreamnt
atgggagtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtccac
agcgtggaggagaagcctaaagaatgcaatggcatcaaaattccagttgataccagcaag
cctaatcctaatgaggtggagtttgataacctgtatttggatatgaatggtattatccat
ccatgtacacatcctgaggacaaaccagctcccaaaaatgaagatgaaatgatggttgcc
atttttgagtacattgacagacttttcaacattgtcaggccaagacgacttctctacatg
gcaatagatggagtagctccccgtgcaaaaatgaatcagcagagatccaggcgattcaga
gcatcaaaggaaggagtggaaggtgcagaagagaagcaaagaataagacaagaaattttg
gcaaaaggtggctttcttcctccagaagaagtgaaagagagatttgacagcaattgtatt
acaccaggaaccgagtttatggacaatcttgctaaatgccttcgctattacattgctgat
cgtttaaacaatgacccagggtggaaaaatttgacagttattttatctgatgcaagtgct
cctggtgaaggggaacacaaaatcatggattacattagaagacagagagctcaaccaaac
catgacccaaacactcatcattgtttgtgtggggctgatgctgatctgatcatgcttgga
ctagctacacatgaaccaaacttcactataatcagagaagagtttaaaccaaataaaccc
aaaccgtgtggtctttgtagtcagtttggccatgaggttaaggattgtcaaggcttgcca
agagagaaacaaggagagcatgatcagtttgcagattgtcctcctggttctgagcaagag
tttatttttatccgattaagtgtgctgcgagagtatttggaaaaagagctaactatggcc
agtttgccttttacttttgatattgagagaagtgtagatgactgggtcttcatgtgtttc
ttcgtgggaaatgactttcttcctcatttgccatctttggagatcagggagggagcaatt
gatcgtctggttggcatatataaaaatgtggtgcacaaaactggggggtaccttacagag
agtggttatgtcaacctacaaagggtacagatgatcatgttggctgttggagaagttgaa
gatagcatttttaaaaagaggaaagatgatgaggagaacttcagaagacgacaaaaagaa
aaaagaaaaagaatgaagagggatcagccttcttttattcctggtggccagttttcccct
caagctttggggagaggaaatagatctagtcctcaggcaatcagtaaccccaggcagaca
gcctatgaaatgagaatgcaagacaaacagaacttgactccttcaacatctcctaatact
agtttcacttctgatggcaccccttccccagcaggaggaattaagcgaaaagcagaagac
agtgacagtgaacctgagccagaggataatatcaggttatgggaatctggttggaaacag
cgctactataagaacaaatttgatgttgatgtgtctgatgagaaattccgtcgtaaagtt
gtacagtcttatgttgaagggctttgctgggttctcagatactattatcagggttgtgct
tcctggaagtggtactatcctttccattatgcgccatttgcctctgactttgaaggtatt
gcagacctgccctcagacttcgaaaagggtacaaaaccgttcagaccacttgaacaactc
atgggagtatttcctgctgctagtggtaactttctaccaccaacatggcggaagctcatg
acggatccagaatcaagtataattgacttctaccctgaagattttgctattgatttgaat
gggaagaaatttgcttggcaaggtgttgctctgctgccattcgttgatgagcgccgtctg
agagctgctctggaagaggtttaccctgacctcactcccgatgaaaaccgaagaaatagt
cttggtggtgatgttatgtttgttgggaaacatcacttgctttgtgactttgtattagaa
ctgtacaaatccagtagcacagagccagtggatataccccctgaactgtgccatggaatc
cagggaaaacttactctgaatgaaaatgcagttcttccagatcagacagtagagtctcct
gttccattgttgcgtgatctgacacagaattcttccatcagtatcgatttcaaagatcca
caatttcaagaagactttgtatttaaagcagtagtgttacctggagcaaaaaaacctgca
ccagttctgaagccgggtgactgggaaaaaaccaacaataatggtaggccttggaggccc
cagcttggttttaatcgagacagaaggccagttcatttggaccagtcggcattcagaacg
ttaggccatgcaatgtcaagggaaagaggacagtcaggaagtggagtctacagtaatgca
gcaccacttggggcttatcagggaaacccctacagaccacttctaggtggccaaccacag
attcctaaattgttgtcaaatctacggccccaagaatcatggcgtggtcccacacctctg
tttcaacagccgccacagagatatgaaagaaattctggggctgcccctcttctatcttgg
aaccgcatgctgcaatcccagggtgcagcattccagcaaaatcagtaccaaggactaggt
ggaccaatgaattacccccacagacctgatgatcgaatggatagaggaagacagggatat
ggccccgggaggccctaccctttgccacctccctctggaagatacaactggaattag

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