Chelonia mydas (green sea turtle): 102941188
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Entry
102941188 CDS
T02989
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cmy
Chelonia mydas (green sea turtle)
Pathway
cmy03008
Ribosome biogenesis in eukaryotes
cmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cmy00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102941188 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
102941188 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cmy03021
]
102941188 (XRN2)
03019 Messenger RNA biogenesis [BR:
cmy03019
]
102941188 (XRN2)
03009 Ribosome biogenesis [BR:
cmy03009
]
102941188 (XRN2)
03016 Transfer RNA biogenesis [BR:
cmy03016
]
102941188 (XRN2)
Transcription machinery [BR:
cmy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102941188 (XRN2)
Messenger RNA biogenesis [BR:
cmy03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
102941188 (XRN2)
Ribosome biogenesis [BR:
cmy03009
]
Eukaryotic type
Pre-60S particles
RNases
102941188 (XRN2)
Transfer RNA biogenesis [BR:
cmy03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102941188 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
102941188
NCBI-ProteinID:
XP_037752169
LinkDB
All DBs
Position
3:199106977..199192340
Genome browser
AA seq
958 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHSVEEKPKECNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVEGAEEKQRIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCSQFGHEVKDCQGLPREKQGEHDQFADCPPGSEQE
FIFIRLSVLREYLEKELTMASLPFTFDIERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEENFRRRQKE
KRKRMKRDQPSFIPGGQFSPQALGRGNRSSPQAISNPRQTAYEMRMQDKQNLTPSTSPNT
SFTSDGTPSPAGGIKRKAEDSDSEPEPEDNIRLWESGWKQRYYKNKFDVDVSDEKFRRKV
VQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADLPSDFEKGTKPFRPLEQL
MGVFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKFAWQGVALLPFVDERRL
RAALEEVYPDLTPDENRRNSLGGDVMFVGKHHLLCDFVLELYKSSSTEPVDIPPELCHGI
QGKLTLNENAVLPDQTVESPVPLLRDLTQNSSISIDFKDPQFQEDFVFKAVVLPGAKKPA
PVLKPGDWEKTNNNGRPWRPQLGFNRDRRPVHLDQSAFRTLGHAMSRERGQSGSGVYSNA
APLGAYQGNPYRPLLGGQPQIPKLLSNLRPQESWRGPTPLFQQPPQRYERNSGAAPLLSW
NRMLQSQGAAFQQNQYQGLGGPMNYPHRPDDRMDRGRQGYGPGRPYPLPPPSGRYNWN
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtccac
agcgtggaggagaagcctaaagaatgcaatggcatcaaaattccagttgataccagcaag
cctaatcctaatgaggtggagtttgataacctgtatttggatatgaatggtattatccat
ccatgtacacatcctgaggacaaaccagctcccaaaaatgaagatgaaatgatggttgcc
atttttgagtacattgacagacttttcaacattgtcaggccaagacgacttctctacatg
gcaatagatggagtagctccccgtgcaaaaatgaatcagcagagatccaggcgattcaga
gcatcaaaggaaggagtggaaggtgcagaagagaagcaaagaataagacaagaaattttg
gcaaaaggtggctttcttcctccagaagaagtgaaagagagatttgacagcaattgtatt
acaccaggaaccgagtttatggacaatcttgctaaatgccttcgctattacattgctgat
cgtttaaacaatgacccagggtggaaaaatttgacagttattttatctgatgcaagtgct
cctggtgaaggggaacacaaaatcatggattacattagaagacagagagctcaaccaaac
catgacccaaacactcatcattgtttgtgtggggctgatgctgatctgatcatgcttgga
ctagctacacatgaaccaaacttcactataatcagagaagagtttaaaccaaataaaccc
aaaccgtgtggtctttgtagtcagtttggccatgaggttaaggattgtcaaggcttgcca
agagagaaacaaggagagcatgatcagtttgcagattgtcctcctggttctgagcaagag
tttatttttatccgattaagtgtgctgcgagagtatttggaaaaagagctaactatggcc
agtttgccttttacttttgatattgagagaagtgtagatgactgggtcttcatgtgtttc
ttcgtgggaaatgactttcttcctcatttgccatctttggagatcagggagggagcaatt
gatcgtctggttggcatatataaaaatgtggtgcacaaaactggggggtaccttacagag
agtggttatgtcaacctacaaagggtacagatgatcatgttggctgttggagaagttgaa
gatagcatttttaaaaagaggaaagatgatgaggagaacttcagaagacgacaaaaagaa
aaaagaaaaagaatgaagagggatcagccttcttttattcctggtggccagttttcccct
caagctttggggagaggaaatagatctagtcctcaggcaatcagtaaccccaggcagaca
gcctatgaaatgagaatgcaagacaaacagaacttgactccttcaacatctcctaatact
agtttcacttctgatggcaccccttccccagcaggaggaattaagcgaaaagcagaagac
agtgacagtgaacctgagccagaggataatatcaggttatgggaatctggttggaaacag
cgctactataagaacaaatttgatgttgatgtgtctgatgagaaattccgtcgtaaagtt
gtacagtcttatgttgaagggctttgctgggttctcagatactattatcagggttgtgct
tcctggaagtggtactatcctttccattatgcgccatttgcctctgactttgaaggtatt
gcagacctgccctcagacttcgaaaagggtacaaaaccgttcagaccacttgaacaactc
atgggagtatttcctgctgctagtggtaactttctaccaccaacatggcggaagctcatg
acggatccagaatcaagtataattgacttctaccctgaagattttgctattgatttgaat
gggaagaaatttgcttggcaaggtgttgctctgctgccattcgttgatgagcgccgtctg
agagctgctctggaagaggtttaccctgacctcactcccgatgaaaaccgaagaaatagt
cttggtggtgatgttatgtttgttgggaaacatcacttgctttgtgactttgtattagaa
ctgtacaaatccagtagcacagagccagtggatataccccctgaactgtgccatggaatc
cagggaaaacttactctgaatgaaaatgcagttcttccagatcagacagtagagtctcct
gttccattgttgcgtgatctgacacagaattcttccatcagtatcgatttcaaagatcca
caatttcaagaagactttgtatttaaagcagtagtgttacctggagcaaaaaaacctgca
ccagttctgaagccgggtgactgggaaaaaaccaacaataatggtaggccttggaggccc
cagcttggttttaatcgagacagaaggccagttcatttggaccagtcggcattcagaacg
ttaggccatgcaatgtcaagggaaagaggacagtcaggaagtggagtctacagtaatgca
gcaccacttggggcttatcagggaaacccctacagaccacttctaggtggccaaccacag
attcctaaattgttgtcaaatctacggccccaagaatcatggcgtggtcccacacctctg
tttcaacagccgccacagagatatgaaagaaattctggggctgcccctcttctatcttgg
aaccgcatgctgcaatcccagggtgcagcattccagcaaaatcagtaccaaggactaggt
ggaccaatgaattacccccacagacctgatgatcgaatggatagaggaagacagggatat
ggccccgggaggccctaccctttgccacctccctctggaagatacaactggaattag
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