KEGG   Cryptococcus neoformans var. neoformans JEC21: CNA05570
Entry
CNA05570          CDS       T00243                                 
Name
(RefSeq) general RNA polymerase II transcription factor, putative
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03022  Basal transcription factors
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CNA05570
  09124 Replication and repair
   03420 Nucleotide excision repair
    CNA05570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cne03021]
    CNA05570
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNA05570
Enzymes [BR:cne01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CNA05570
Transcription machinery [BR:cne03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CNA05570
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CNA05570
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 ResIII DEAD nSTAND3 DUF4932 YtxC
Other DBs
NCBI-GeneID: 3253270
NCBI-ProteinID: XP_024511944
LinkDB
Position
1:join(1489311..1489357,1489437..1489447,1489501..1489547,1489604..1489681,1489740..1489913,1489964..1490083,1490130..1490246,1490299..1490422,1490479..1490783,1490827..1490921,1490977..1491165,1491216..1491573,1491626..1491795,1491844..1491873,1491923..1492103,1492156..1492509)
AA seq 799 aa
MKFMLGDLPVLFPYDRLYPEQYSYMADLKTTLDAGGHCVLEMPSGTGKTVSLLSLIIAYM
QFYPNKRKLIYCSRTVPEIEKALAELKRLMMYRAEMGANDGDFRGLGLTSRRNLCLHPEV
SKEKKGKIVDSRCRDLTSAFACEKGRADPGSVPLCSFHEELNNYEPGNLIPPGVYTLDDV
KKYGQEKGVCPYFTIRRMLPFLDVMIYSFHYLLDPKVAEQVSAEMSKESIVIFDEAHNID
NVCIESLSIDLTRPMLDSAARSVNKLSDKIAEIKETDAKKLEDEYAKLVEGLQEANERVE
DDDMLVSPVLSKDMVDEAIPGNIRKAEHFIAFLKRFIEYLKTRMRVLHVVAETPQSFLAH
LKEITYIDQRPLKFASERLTCLVRTLELTNLEEHSALQKVAGFGTLVATYEKGFLLILEP
YETEHATVPNPIFHFTCLDPSLAIAPVFDRFASVVITSGTISPLDMYPKMLQFQPVMEQS
YPMTLTRNAFLPMVITRGSDQVPISSRFEVRNDPAVVRNFGSILIEMARTVPDGVVAFFP
SYLYMESIVSAWYDMGILSEVWKHKLLFVETPDAMETSIALRNYREACNNGRGAVLLSVA
RGKVSEGIDFDHNYGRAVIMFGIPYQYTESRILKARLEFLRDNHRIRENDYLTFDAMRHA
AQCVGRVLRGKTDWGLMVFADKRFARQDKRAKLPKWINSYITEAHSNLSTDVAVSLAKKF
IRQISQPFDHTQTGISLWTLEDIEERQRRDKDEAERVEMTQSAAIRESAAEENDHAPLAS
DYMEIDDAELAGLSIPIDE
NT seq 2400 nt   +upstreamnt  +downstreamnt
atgaagtttatgcttggcgatcttcccgttctgttcccttatgatcggctgtatcccgag
caatactcctacatggctgacctgaaaacaacattggacgcaggaggacattgtgtactt
gaaatgccctcgggaacaggaaaaaccgtatccctgctatctctgatcattgcctatatg
caattttaccctaataaacggaaactgatttactgctcacggacagttccggaaatagag
aaggctttagcggaactcaagcgattgatgatgtaccgcgcagagatgggggcaaatgat
ggtgatttcagaggactgggattgacgagtcggcggaatctttgtcttcacccggaagtc
agcaaagagaaaaaaggcaaaatagttgattcgcggtgcagggatctcacctcagcgttc
gcttgtgaaaaagggagggctgacccggggagcgtaccattatgtagtttccatgaggag
ttgaacaattacgagcccgggaatcttatacccccaggcgtctatactctggatgatgtt
aagaagtatggccaagaaaagggtgtctgtccgtactttacgatcagaagaatgttgcct
ttcctcgacgttatgatatactccttccattatcttctggatccaaaggtcgcagagcag
gtgtccgctgaaatgagcaaggagagcattgtgatatttgatgaagcacacaacattgat
aatgtctgtatcgagtccctatccatcgacttgacgaggccaatgttggattcggccgca
agaagcgtcaataaacttagtgacaagattgcggaaatcaaggagactgatgcgaagaag
ctggaggatgagtacgcaaaactagtcgaaggtctgcaagaagccaacgagcgagtggaa
gatgacgacatgctcgtcagtccggttctgtcaaaagacatggtggatgaagctatacct
gggaacattcgaaaggcggagcattttatagctttcctcaaacgattcattgaatatctc
aagactaggatgcgcgtgctgcatgttgtagcagagacacctcaatcattcctagcgcat
ctgaaagaaataacatatattgatcaacggcctctcaaatttgcttccgagcgccttact
tgtttggttcgcacattggaattgacaaacttggaagaacattctgcgctgcaaaaggtt
gctggttttgggacccttgttgccacttacgaaaaaggattcctactgatcctcgagcct
tacgaaaccgagcacgccacagtgcctaaccccatttttcatttcacttgtcttgaccca
tcgctcgctatagcgcccgtctttgaccgttttgcctcagtggtcatcacttccggtacc
atatctcccctcgacatgtaccccaaaatgttacaattccaacctgttatggaacagtcg
tatcctatgaccctcacccgaaacgcttttttaccaatggttataactcgaggcagtgat
caagtcccaatttcctccagatttgaggttagaaatgatcctgcagtcgtacgaaatttt
ggaagcatcttgattgaaatggcacggactgtccctgatggagtggtggcattctttccc
agttatctatatatggaatctattgtttcagcttggtatgacatgggcattctaagtgag
gtgtggaagcataagctactgttcgtggaaactccagacgccatggaaacgagcatagcc
ctcaggaattatcgcgaggcatgtaataatggaagaggggctgtccttctctctgtggcg
cgaggaaaggtgtccgaaggaattgatttcgaccacaattatgggcgagctgttattatg
tttggcattccctatcaatacacggaatcacgtattctcaaagctcggctggagtttctt
cgagataatcataggatccgagaaaacgattatcttactttcgacgctatgcgacatgct
gcccaatgcgttggtcgtgtgttgcgagggaagaccgactggggtctgatggtctttgcg
gacaagcgatttgcgagacaagacaagagggcaaaacttccgaaatggatcaacagttat
attacggaggcccattccaacttgtccacggatgtggctgtttcgctggccaaaaagttc
atacgtcaaatctcgcaaccatttgatcacacacagacagggatatctttatggactctt
gaggacatagaggagaggcaaagacgggataaggatgaagctgaaagggtcgaaatgaca
caatcagcagcaattagagagagtgccgccgaggagaatgaccatgctccgcttgctagc
gattacatggagattgacgacgccgagttggcggggctgtctatacccatagatgaataa

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