Caldicellulosiruptor obsidiansis: COB47_1978
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Entry
COB47_1978 CDS
T01293
Name
(GenBank) tRNA pseudouridine synthase D TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
cob
Caldicellulosiruptor obsidiansis
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cob03016
]
COB47_1978
Enzymes [BR:
cob01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
COB47_1978
Transfer RNA biogenesis [BR:
cob03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
COB47_1978
Prokaryotic type
COB47_1978
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GFIT
Motif
Pfam:
TruD
OMP_b-brl_2
Motif
Other DBs
NCBI-ProteinID:
ADL43243
UniProt:
D9TGC3
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All DBs
Position
complement(2130023..2131192)
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AA seq
389 aa
AA seq
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MKIKVVPEDFVVREKINLEIKPSGRYKIYLLTKRHWNTVDALRFISKENRIPIEKIGCAG
RKDRHAFTFQYISVPREYTINFDRENVKVQFIGYSDDFVSPLILEGNFFEITIRKLKNKD
EKILRRLNEVQQFGFPNYFDDQRFGSTQSEDEFIGEKIIKKHYNGALKLYFTTIHPEDKK
EEKERKKKIAELWGDFEKILPLCKTKVERDIIKTLLKGKSKHYLIEALNLIPKEEMSIFL
SAYQSYIWNRTLIAVLPYYADLLKPVKGKIIDYLIYTTLSTKSLNSLKNLQIPTVSSKIP
YVNDIVNNAILEILNERGVKPSDFDTKKIKSWYFKSFLRPAIVFPENLEISDFEEDDFYN
GYYKLRIKFYLPAGSFATMLIKSLTITNT
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgaagattaaggttgtaccagaggattttgttgtgagagaaaaaatcaatcttgagata
aaaccgtcgggcagatacaaaatttatcttttaacaaaaagacactggaacactgttgat
gctctcagattcatttcaaaggagaacaggattcctatagaaaagattggatgtgcaggc
agaaaagacagacacgcatttacttttcagtatatttctgtaccaagagaatataccata
aattttgacagagaaaatgtaaaggttcagttcatagggtattcagatgattttgtatcc
cctttgattctcgaagggaatttttttgaaataacaataagaaaattaaaaaataaggat
gaaaaaattttacgaagactgaatgaagtacagcagtttggttttcccaactactttgac
gaccagcggtttggaagcacccaaagtgaagatgagttcataggagaaaagattattaaa
aaacattacaacggtgctctcaaactttactttactaccattcatcctgaagataaaaaa
gaagaaaaagagagaaaaaagaaaatagctgaactctggggagattttgaaaagatacta
cctctttgtaaaacaaaggtagaaagagatattataaagactcttctaaaaggcaagagc
aaacactatttaatcgaagcactcaatcttattcccaaagaagagatgtctatttttctt
tctgcttaccagagctatatttggaacaggacattgattgcagttttgccctattatgct
gatttgttaaaacctgtaaaaggaaaaattatagactacttgatttacactacactttca
acaaagtctttaaatagcttaaaaaaccttcagattccaactgtttcatcaaaaatacca
tatgtaaatgatattgtaaataacgctattttagagattttaaatgaaagaggagtaaag
ccttctgactttgatacaaagaaaattaaaagttggtattttaaatcatttttaagacct
gctatagtctttccagaaaatcttgaaatttctgattttgaagaagatgatttttataat
gggtattataagcttaggataaaattctatcttcctgccggttcttttgctacgatgctt
ataaaaagtttaacgattacaaacacataa
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