Caldicellulosiruptor obsidiansis: COB47_2291
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Entry
COB47_2291 CDS
T01293
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
COB47_2291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cob03400
]
COB47_2291
Enzymes [BR:
cob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
COB47_2291
DNA repair and recombination proteins [BR:
cob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
COB47_2291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_4
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
UvrD-helicase
PIF1
nSTAND3
DEAD
AAA_22
Helicase_RecD
T2SSE
AAA_12
SLFN-g3_helicase
NTPase_1
AAA_24
HHH_2
AAA_29
UvrD_C
ABC_ATPase
ATPase_2
HerA_C
PhoH
MeaB
ABC_tran
AAA
SpoIISA_toxin
AAA_25
IL4Ra_N
KOW
Mg_chelatase
RsgA_GTPase
AAA_16
AAA_28
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADL43527
UniProt:
D9THQ2
LinkDB
All DBs
Position
complement(2491411..2493636)
Genome browser
AA seq
741 aa
AA seq
DB search
MQQNIQGMVSDIIYRNLENSYTVFEIICDDEVFTAVGIVPDIAIGEKVSVYGEFYVHPVY
GQQLKVSYLEKLLPQTKDEIYLYLSSGVIKGIGQKTAKKIVDTFGDDTARVLQEEPEKLL
SIRGMTPEKVERIRNMFAFQKFLKDIMSIFSQYGLSQNHAMRLFKLYGFSALSLLQENPY
FLLEVFPELDFKKVDRLALDMGVMPDDGRRISAKILNLLTLAANSEGHTCLPENRLKQVC
SKTLDLPVEKIEDALEVLAQERRIVKDEVESQKMVFLYGYYECEKYIADKILSMLKEYDD
IADIDEKISQFEAKNGIAFSPNQKKAIKMALTQGVSIITGGPGTGKTTIIKCIIQIFEGE
GKKVFLCAPTGRAAKRMQAACERESKTIHRLLEMTVLDTHVIFQKGPNNPLKCDAIVVDE
MSMVDSFLMNYLLAATKPTTRIVLVGDKDQLPSVGAGNVLKDLIKSEIVPCTTLTEVYRQ
SENSFIVLNAHRINRGEFPHLQKESDFYFIQKNSQEEILKTVIELVIKKVPNYLSCDPMT
DIQVLCPSKKGIVGMYNLNRVLQQYLNPPHPSKKEYAYKENLFRVGDKVMQVKNNYSLEY
EILQGEEKGKVSTGIFNGDIGVVKDIDRAQGVLEILFDDEKFVYYDFSLLDDLELAYAMT
VHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVVLVGKKSALEYMIANQKEAM
RYSALCDFLLRGQENMQVRAL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaaacattcaaggtatggttagcgatataatctacaggaatttggaaaatagc
tatacggtgtttgagataatctgcgacgatgaggtgttcacagcagtagggatagttcca
gacattgctatcggtgaaaaggtgagcgtatacggtgagttttatgttcatcctgtttac
ggtcagcagctgaaagtaagctaccttgagaaacttctgccgcagacaaaggatgagata
tatctttatctttcctctggagtaataaaaggtatcgggcagaagactgcaaagaagatt
gttgatacctttggagatgacactgcaagagttttgcaggaagagcctgaaaagcttctt
agtattcgcggcatgacacccgaaaaggttgagcgaataaggaatatgtttgcattccaa
aaatttttgaaagatatcatgtcaatcttttcccagtacgggctttcacagaaccatgca
atgagactttttaaactttatggattttctgctctgtcgcttttacaggaaaatccatat
tttcttttagaagtgttcccagagcttgactttaaaaaggttgacaggcttgcacttgac
atgggagttatgccagatgacggaagaagaatatctgccaagatacttaatcttttgaca
ctggcagcaaatagtgaagggcatacctgcctgccagaaaataggctcaaacaggtttgt
tcaaaaactcttgaccttccagtggaaaaaatagaagatgcgcttgaagttttagctcaa
gaaagaagaattgtaaaagatgaagttgaatctcaaaagatggtgtttttgtacggttac
tatgagtgtgaaaagtatatagcagataaaatcctgtcaatgctaaaagaatatgatgac
attgctgatatagatgaaaagatctctcagtttgaagcaaaaaacggtattgcattttcg
ccaaatcaaaagaaagccatcaagatggcactgactcaaggcgttagcattatcacagga
ggtcctggtacaggaaagacaacaataataaaatgcattattcaaattttcgagggtgaa
ggcaaaaaggtttttctttgtgcaccaacaggaagagctgcaaagaggatgcaggcagcc
tgcgaaagagaatcaaaaacaatccacagacttttggaaatgacagttttagacacacat
gttattttccaaaaaggaccaaataatcccttaaaatgcgatgctatagtggtggatgaa
atgagcatggtagacagtttcctgatgaactatcttcttgctgcaacaaaaccgacaaca
agaattgtgcttgttggagacaaagaccagcttccatctgttggtgcagggaatgtctta
aaagaccttataaaaagcgaaattgtaccttgcaccactttgacagaggtgtatcgccag
agcgaaaatagctttatagtcctcaatgcacacaggataaacagaggtgagtttccacat
cttcaaaaggagagcgatttttattttatccagaaaaactctcaggaagagattttaaaa
actgtaattgaacttgtgataaaaaaggttccaaactatctttcgtgcgatccgatgaca
gacatccaggtcctgtgtccttcaaaaaaagggattgttgggatgtacaacttaaatcgt
gtgctgcagcagtacttaaacccacctcatccttctaaaaaagagtatgcttataaagaa
aacctgttcagagttggagacaaggtcatgcaggtaaaaaacaactattcacttgaatat
gagattttacaaggagaggagaagggcaaagtctcaacagggatattcaatggcgacatt
ggagttgtcaaagatattgacagggcgcaaggtgtgctggaaatcctgtttgacgatgaa
aagtttgtgtattatgacttttcgctgcttgacgatttagaacttgcatatgcaatgact
gttcacaaatcgcaagggtcagagttcaggtgcatagtgatgcctgttgttgagacctac
cccattttgatgacaagaaaccttctttacactgccgtaacacgagcaaaagaacttgtt
gtgttggtgggtaaaaaaagcgcgcttgaatacatgatagcaaaccaaaaagaggctatg
cgatattcagcactttgcgactttttattgcgcgggcaagaaaatatgcaagtgcgagct
ttataa
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