Capnocytophaga ochracea: Coch_0334
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Entry
Coch_0334 CDS
T00961
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
coc
Capnocytophaga ochracea
Brite
KEGG Orthology (KO) [BR:
coc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coc03032
]
Coch_0334
03400 DNA repair and recombination proteins [BR:
coc03400
]
Coch_0334
Enzymes [BR:
coc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Coch_0334
DNA replication proteins [BR:
coc03032
]
Prokaryotic type
DNA Topoisomerases
Coch_0334
DNA repair and recombination proteins [BR:
coc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Coch_0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF6429
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ACU91897
UniProt:
C7M620
LinkDB
All DBs
Position
complement(419043..421520)
Genome browser
AA seq
825 aa
AA seq
DB search
MAKNVVIVESPAKAKTIEKFLGKDYKVVSSYGHIVDLPSNELGVDIQHGFKPNYLISNDK
KNLVKELKALTSKAEVVWLASDEDREGEAIAFHLSETLKLKKENTKRIVFNSITKSAIEN
AIKNPRGIDYNLVNAQQARRVLDRLVGYELSPVLWKKIKSGLSAGRVQSVAVRLIVERER
EIQDFKTQSSYRITAEFITSEGKVVKASLPKNFNTQAEAENFLQQNIGAHFKVQSLETKP
AKKMPAPPFTTSTLQQEAARKLHFSVSKTMTVAQRLYESGFITYMRTDSVNLSQEALNTA
KNAIVQLFGAQYSQVRKFATKSKGAQEAHEAIRPTDMSRSSIAAEPDQNKLYELIWKRTL
ASQMADAQIERTTVKIEADKHKEHFVASGEMVQFDGFLKVYLESTDDEEEEQEGMLPNLK
KGEALTHRYITATERFTRPLPRYTEASLVKKLEELGIGRPSTYAPTISTIQNRGYVERST
LEGEVRPYQQLTLTGNSIKTQTLSERVGADKGKLVPTDIGSVVNDFLVSHFDTIMDYNFT
AKVENSFDEIAEGTENWTKMLTQFYNHFHSVVENVEKHTGRETGERVLGTDPKSGRPLSV
RLGRYGAMAQIGNPDDAEKPIYASLLAGMSIETITFEEALKLFELPRQLGIVDGKNVEVN
VGRFGPYVRYGDAFISLDKGEDVFSITLERAKQLIGEKKKADAPIATYQGVEVTKGVGRF
GPFIKWNNTYINVTKKYNFDHLSQQDVEELIEDKLKKESEKVVKEWDEGAIRIEKARWGR
FTLLKGKTKVELPKDTDIATLTKEQALTLLTEKEPKAKKAPSKKK
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaatgtagtgattgtagagtcgcctgccaaggctaaaaccattgaaaagttc
ttaggtaaggactacaaagtagtgtccagctatgggcatattgtcgatttgccctccaat
gaactgggcgtagatatccagcacggttttaaacctaattacctcatctctaacgacaaa
aaaaatcttgtaaaagaactcaaagcactcacgtccaaagccgaagtagtatggctcgct
tccgatgaagaccgtgaaggagaagctattgcgtttcatctttccgaaacactcaaacta
aaaaaggaaaataccaagcgcatcgtttttaactccattaccaaatcggctattgaaaac
gctattaaaaaccctcgtggtatcgattataatctggtgaatgctcagcaagcacgccgt
gtactcgaccgcctcgtgggctatgaactctctcccgtactgtggaaaaaaattaaaagc
ggactctcagcaggacgcgttcagtcggtagcagtacgccttatcgtagaacgcgaacgc
gaaatacaagacttcaaaacgcaatcctcttaccgaattactgccgaatttatcacctca
gaaggcaaagttgtaaaagcctctttgcctaagaatttcaacacacaagccgaagctgaa
aacttcttgcaacagaatatcggagcgcatttcaaagtgcaatcattagaaaccaaacca
gctaagaaaatgcctgcgccccccttcactacttccaccctccaacaagaagccgcacgc
aaactgcacttttcagtaagcaaaacaatgacggtagcccaacgcctctacgaatctggt
ttcatcacctatatgcgtaccgatagcgtgaatctttcacaagaagcgctcaacactgcc
aaaaacgctatcgtgcaactcttcggagctcagtacagtcaagtgcgcaagttcgctact
aaaagcaaaggcgcacaagaggcgcacgaagccattcgtcctaccgatatgagtcgctcc
tctatcgctgctgaacccgaccagaataagctatacgaactgatatggaaacgcaccctt
gcctcacaaatggcagatgctcaaatagagcgcactaccgtaaaaatagaagccgataag
cacaaagaacacttcgtagccagtggcgaaatggtacagtttgatggttttttaaaagtg
tatttagaaagtactgacgacgaggaagaagaacaagaaggaatgctccccaatctcaaa
aaaggagaagctcttacgcatcgctatattactgctaccgagcgtttcactcgtccacta
cctcgttatactgaggcttcgctggtgaaaaagttagaggaactcggtatcggacgccca
tctacttatgctcctaccatttctacgattcaaaaccgcggatatgtggaacgtagcaca
ctcgaaggtgaagtgcgcccctatcagcaacttacccttacaggtaatagtatcaaaacg
caaactcttagcgaacgagtaggtgccgataaaggcaagcttgtccccactgatataggt
agtgtagtaaacgattttctcgtctcccatttcgatacgataatggactataatttcact
gccaaagtagaaaatagcttcgacgaaatagccgaaggcactgagaattggacaaagatg
ctcacacagttttataatcattttcactccgtagtagaaaatgttgaaaaacatacaggt
cgtgaaacaggtgaacgcgtgctgggtaccgaccctaaatcaggtcgccctctcagcgta
cgcttaggtcgttatggagctatggcgcaaatagggaatcccgacgatgccgaaaagcct
atttatgcaagtttattggcaggtatgtctatcgaaacgattacttttgaagaagccctc
aaactcttcgagcttcctcgtcagttaggcattgtcgatggtaagaatgtagaagtgaat
gtagggcgtttcggcccctatgtgcgctacggcgatgcttttatatcacttgataagggt
gaagacgttttcagtataactctcgagcgggctaagcaactcatcggcgagaagaaaaaa
gctgacgctcctattgctacctatcaaggagtggaagttaccaaaggtgtaggtcgtttt
ggtccctttattaagtggaacaatacttatataaacgttaccaaaaagtacaatttcgac
catcttagtcagcaagatgtagaagaacttatagaagataagctcaaaaaagaatcggaa
aaggtagtaaaagaatgggacgaaggagctatccgtatagagaaagctcgctggggacgt
tttaccctcctcaaaggtaaaaccaaagtagaactccccaaagacaccgatatagcaact
ttgaccaaagaacaagctcttaccctgctcaccgagaaagagcctaaagctaaaaaagcc
ccttctaaaaagaaataa
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