Colwellia sp. PAMC 20917: A3Q34_07820
Help
Entry
A3Q34_07820 CDS
T04511
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
coz
Colwellia sp. PAMC 20917
Pathway
coz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
coz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A3Q34_07820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coz03021
]
A3Q34_07820
Transcription machinery [BR:
coz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A3Q34_07820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AOW76766
UniProt:
A0A1D8RUH1
LinkDB
All DBs
Position
1836144..1837985
Genome browser
AA seq
613 aa
AA seq
DB search
MNQAPQSRLKELITKGKEQGYLTFAQVNDHLPQDIIDSDQVEDIVRMINDMGIQVFETAP
DQDTLMMTEGNTDEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIA
KRIEEGIKEVQRSVAEYPPAINFLLDMWDNFEAEEVRLTDIIVGFLDPDAEEEEIPAAAT
HIGSELSKEELNDEDKSDGDEEDEEEEDTGPCPELAKEKFTLLRNAYEKANKVINAKGRG
HKDAQAAIDDLAEVFKEFRLIPKLFDKLVKNMRSVMDRLRIQERLIMKHCVVGAGMPKTT
FIKIFPGNETSKDWFNEQKAAGHAYSAKLSDIELDVERCIYKLNQLEKETFLNVHGIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMIMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNGELPVDSATAENLK
DATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEQLKSFLDGE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagccccacaatctagacttaaagagctcattaccaaaggtaaagagcaaggt
tacttaacttttgctcaagttaacgatcacctgccacaagatataatcgattcagaccaa
gttgaagacatcgttagaatgatcaacgacatgggtattcaggtattcgaaactgctcca
gatcaagacaccttgatgatgacagaaggtaatactgatgaagatgctgctgaagcagct
gcccaagcacttgctacggttgaaagcgaaattggtagaacgactgatcctgtccgcatg
tacatgcgtgaaatgggcacggttgagctattaacgcgtaaaggcgaaattgttatcgct
aagcgtattgaagaaggcatcaaagaagttcagcgtagtgttgctgaatatccgccggca
atcaatttcttgctcgatatgtgggacaactttgaagctgaagaagtacgtttaaccgat
attatcgttggctttttagaccctgatgctgaagaagaagaaattccagcagcagcgacg
catattggttcagagctttcaaaagaagagctcaacgacgaagataagtctgatggcgac
gaggaagatgaggaagaagaagataccggtccttgtcctgaacttgctaaagaaaagttc
actctacttcgcaatgcctacgaaaaagcaaataaagttattaatgctaaaggtcgtggt
cataaagacgcacaagcagcgattgatgatttagctgaagtatttaaagaattccgttta
atccctaaactttttgataagcttgttaaaaacatgcgtagcgtaatggatagattacgt
attcaagaacgtttaatcatgaagcactgtgttgttggtgctggcatgcctaaaacaacc
tttatcaaaatttttccaggcaatgaaacctctaaagattggtttaacgagcaaaaagct
gcaggtcatgcttattcagcaaaattatctgatattgagttagacgttgaacgttgtatt
tataaattaaatcaattagaaaaagaaacgttcttaaatgtacacggtataaaagatatt
aaccgtcgtatgtctatcggtgaagctaaggctcgtcgtgcgaaaaaagaaatggttgaa
gctaacctacgtttagttatctcgattgctaaaaaatataccaaccgtggtttacaattc
ttagatttaatccaagaaggtaacattggtttgatgaaagcggttgataaatttgaatac
cgtcgtggttacaaattttcaacgtatgcaacgtggtggatccgtcaagcgatcacccgt
tcaattgctgaccaagccagaacgattcgtatccctgtgcatatgatagaaacgattaat
aaattaaatcgtatttctcgtcagatgttacaagaaatgggacgtgagccaacacctgaa
gaattagctgaacgcatgatcatgccggaagataagattcgtaaagtattgaagattgct
aaagaacctatttcaatggaaacccctatcggtgatgacgaagattcacacttgggcgat
tttattgaagatggtaatggcgaactacctgttgactcggctaccgctgaaaacttgaaa
gatgcgacacacgaagtattagctggcttaaccgctcgtgaagctaaagtgttaagaatg
cgttttggtatcgacatgaatactgatcatacgttagaagaagtgggtaagcagtttgat
gttacccgtgaacgtattcgtcaaatcgaagcaaaagcgttacgtaaattacgtcaccct
tctcgctctgagcaacttaaaagtttcttagacggcgaataa
DBGET
integrated database retrieval system
