Carica papaya (papaya): 110810133
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Entry
110810133 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03082
ATP-dependent chromatin remodeling
cpap03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110810133
03083 Polycomb repressive complex
110810133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpap03036
]
110810133
Enzymes [BR:
cpap01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
110810133
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
110810133
HDAC complexes
Sin3A-HDAC complex
110810133
BRAF-HDAC complex
110810133
REST complex
110810133
SHIP complex
110810133
MiDAC complex
110810133
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
110810133
Heterochromatin formation proteins
Other heterochromatin formation proteins
110810133
Chromatin remodeling factors
NuRD complex
110810133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
110810133
NCBI-ProteinID:
XP_021891899
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MADAMGGASLASGPDGKKRRVSYFYEPTIGDYYYGQSHPMKPHRIRMAHNIIVHYGLHRR
MEINRPFPAGLADIRRFHSDDYVEFLASVSPESLGDPAYSRHLKRFNVXEDCPVFDGLFP
FCQASAGGSIGAAVKLNRSDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHR
RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDVGVGNGKYYALNVPL
NDGMDDESFKGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL
RSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVEPC
NMENLNSPKDMEKIRNMLLEQLSRISHAPSVPFQTTPPTTQVPEKVEENMDQRPKPRIWN
GEDYESDPDDDEKPRHIFSNSDGRLVQDVEMRDAAYEVKEEKAEPKPPS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgatgggaggcgcgtcgctggcctctggacccgatggtaagaagcgccgg
gttagctacttctacgaaccgaccatcggggactactactacggccagagtcacccgatg
aagccccatcggatccggatggcccacaacattattgttcactacggccttcaccgtcgg
atggagatcaatcgacccttccccgccgggctcgctgacatacggagattccacagcgat
gattacgtcgaattcctcgcctccgtctcaccggagtctctcggtgaccctgcctactct
cgccacctgaagcgcttcaacgtcngcgaggactgccccgtcttcgacggcctcttcccc
ttttgtcaggcctctgctggtggttctatcggtgccgccgtcaagctcaaccggtccgat
gccgatatagccatcaactgggccggcggtctccaccatgctaagaagagcgaggcttct
ggtttctgctatgttaatgacattgtgcttggcattcttgagttgctcaaggttcacagg
cgtgtgctctatgtagatatcgatgttcaccatggagatggtgtggaggaggcattttat
acgacagacagagtcatgactgtgtcttttcataaatttggagatttctttccagggact
gggcacattagggatgtcggagtaggaaatgggaaatattatgctcttaatgtccctcta
aatgatgggatggatgatgaaagttttaaaggtctgtttagacccatcatccaaaaagta
atggaggtgtatcagccagatgcagttgttctccagtgtggagcggattcattatctggt
gaccggttaggatgcttcaacttgtctgtgaagggccatgcagattgccttcgatttctt
aggtcttacaatgttcctctgatggtgctaggtgggggaggttatactattcggaatgtc
gcccgttgctggtgctatgagacagcggttgcagttggggtggaacctgataacaaattg
ccttataatgagtattatgaatattttggcccggattatacccttcatgttgaaccatgt
aacatggagaatctgaactcacccaaagatatggaaaagataaggaatatgttactagag
caactttcaagaatatctcatgctcctagtgtacctttccagactaccccaccaactact
caagtgccagaaaaggtggaggagaacatggatcaaaggccaaaaccacgcatttggaat
ggtgaagattacgagtcagatcctgatgatgatgagaagccgcgtcatattttctcaaat
tctgatggtcgacttgtgcaagatgttgagatgagagatgctgcatatgaagtgaaagaa
gagaaggcagaaccaaagccaccgtcttga
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