Clostridium pasteurianum BC1: Clopa_4519
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Entry
Clopa_4519 CDS
T02645
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpas
Clostridium pasteurianum BC1
Pathway
cpas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Clopa_4519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpas03021
]
Clopa_4519
03400 DNA repair and recombination proteins [BR:
cpas03400
]
Clopa_4519
Enzymes [BR:
cpas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Clopa_4519
Transcription machinery [BR:
cpas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Clopa_4519
DNA repair and recombination proteins [BR:
cpas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Clopa_4519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGK99229
UniProt:
R4KFA8
LinkDB
All DBs
Position
complement(4581806..4585333)
Genome browser
AA seq
1175 aa
AA seq
DB search
MELNNFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPMKDWECH
CGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMS
PRALEKILYFASYVVLDPKETALLKKQLLNEKEYREAIDKYGEDSFDAGMGAESIKRLLE
EIGLEQLSVELKDDLKTSTGQKRIRIIRRLEVVESFRKSSNKPDWMIIDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKE
MALELFKPFVMKKLVESGVAHNIKSAKRMVERVQPQVWDVLEEVISDHPVLLNRAPTLHR
LGIQAFQPILVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNIL
KPSDGKPVCVPTQDMVLGSYYLTIDKDNVKGEGNSFSSPEEVIMAYQLGEVDVHAKVKVK
LFKVIDGEKVYKIIDTTPGKLLFNESIPQDLGFIDRSVPENEFKLEVDFLVGKKNLGKII
DKCYLKHGPTKTSIMLDKIKAKGYHYSSIGAITVSTSDMTVPPEKKTLLNEAQTSVDKIE
KLYRRGYISENERYERVIDVWTKTTEEVADALMNNLDRFNPIFMMADSGARGSKSQIKQL
AGMRGLMANPSGKILEMPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRRL
VDVSQDVIVKVDDCGAEEGFEVSEIKEGNEVIEPLKERLTGRYNAEDIINPKTKDIIVHR
DTYMDIHLAEKVENAGVKKVKIRSVFTCDCKYGVCAKCYGMDMATAQQIGIGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVSGTVRLEDTK
KKRIIYIVTDAGEEVSYDIPFGSSLKVRNGDIINAGDEITEGSINPHDILRIKGVNAVKN
YLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKVEDSGDTELLPGTMIDIFDFNEANDS
IEANGGEPAKGRIALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKENV
IIGKLIPAGTGMARYKNISIEDEKREDNEILVKES
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttggaattaaataattttgatgctttacaaataggattagcttcaccagaaaagataaga
gaatggtctagaggtgaagtgaaaaaaccagaaactataaattataggactttaaaacct
gaaaaggatggattattctgtgaaagaatatttggacctatgaaggattgggaatgtcat
tgtggtaaatataaaagagttaggtataaaggtatagtatgtgatagatgtggtgtagaa
gtaactaaggctaaagttaggcgtgaaagaatgggtcatatagagcttgctgccccagta
tctcatatatggtattttaaaggaataccatctcgtatgggattgatactagatatgtct
cctagagctttagaaaaaatactgtactttgcatcctatgttgttctagatccaaaagaa
acagctttattaaagaaacagcttttgaacgaaaaagaatatagagaagctattgataag
tatggtgaagatagcttcgatgctggaatgggagctgaatcaattaaaagattacttgaa
gaaataggattagagcagctgtctgttgaactaaaagatgatttaaaaacaagtacagga
cagaagagaataagaataataagaagattagaagttgtagaatcttttagaaaatcaagt
aacaaacctgactggatgattattgatgtaataccagttattccaccagatttaagacct
atggttcaacttgatggtggaagatttgctacttctgacttaaatgacctttatagaaga
gtcattaatagaaataatagacttaaaaaacttttagatttgggagctccagatataatt
gtaagaaatgaaaaaagaatgttgcaagaggctgtagatgctcttattgataatggaaga
agaggaaggccggtaacaggaccgggaaataggcctctaaaatctctttcagatatgctt
aagggtaaacaaggaagatttagacaaaatcttcttggaaaacgtgttgactattcaggc
cgttcagttatagttgttggaccggaattaaaaatgtatcaatgcggacttccaaaggaa
atggcattagaattatttaagccttttgtaatgaagaagttggttgaaagtggagttgcc
cataatataaaaagtgcaaagagaatggttgaaagagttcaacctcaggtttgggatgta
cttgaagaagtaatttcagatcatcctgtattgttaaatcgtgcacctactcttcataga
ctaggaattcaagctttccaacctatattagttgagggaagagcaataaaattacatcca
cttgcttgtacagcatataatgcagattttgatggtgatcagatggcggtccatgttcct
ttatcagtggaagcgcaagcagaagcaagatttttaatgttagctgctcataatatatta
aaaccatcagatggtaagcctgtatgtgttccaacacaggatatggtattgggatcttat
tatttgaccattgataaagataatgttaaaggtgaaggaaattcattttcttcgccagaa
gaagttattatggcatatcaattaggagaagttgatgttcatgctaaagtaaaagttaaa
ttgtttaaggttattgatggggaaaaagtatataaaataatagatactacacctggaaaa
cttttatttaatgagtccatacctcaagatctaggatttattgatagaagtgttcctgaa
aatgaatttaaactagaagttgatttcttagttggtaaaaagaatttaggtaagattata
gataaatgttatttaaagcacgggccaactaaaacatcaattatgttagataagattaaa
gctaagggataccactattcatctataggagctataacagtttctacatctgatatgacg
gttcctccagaaaagaaaactttacttaatgaagcacaaacgtctgttgataaaatagaa
aaattgtatagaagaggatatatttctgaaaatgagagatatgaaagagtaatagatgtt
tggactaaaacaactgaggaagttgcagatgctcttatgaataacttggatagatttaat
cctatatttatgatggctgattcaggagccagaggttctaagagtcagattaagcagctt
gctggtatgagaggacttatggctaatccatctggtaagattttggaaatgcctattaaa
gcatcttttagagagggccttgatgtgcttgagtactttatatcaactcatggagcaaga
aaaggtaatgcagatacagcacttaagacagcggattcaggatatcttacaagaagactt
gtagatgtatcacaagatgttattgtaaaagttgatgattgtggtgctgaagaagggttt
gaagtatctgaaataaaagagggaaatgaagttatagaacctttaaaagaaagacttaca
ggtagatataatgctgaagatattataaatcctaagacaaaagatataattgtccataga
gatacctacatggatattcacctagctgagaaagtagaaaatgctggggttaaaaaagta
aaaataagatctgtatttacatgtgattgtaaatatggtgtatgcgctaaatgttatggt
atggatatggctactgctcagcaaataggtattggtgaagccgttggaattatagcagcc
cagtcaattggtgaaccgggaacacaattaaccatgagaacattccatacaggaggagtt
gcaggagcagatataactcaaggtcttcctagagttgaagaactttttgaagcaagaaaa
ccaaagggtcttgcaatagtaagtgaagtttcgggaaccgtcagacttgaagatactaag
aaaaagaggataatatatattgtcactgatgctggtgaggaagttagttatgatatacct
tttggatcaagtcttaaggttcgaaatggagatattataaatgctggagatgaaattaca
gagggttctataaatccacatgatatattaagaataaaaggtgttaatgctgttaaaaat
tatctcctgtcggaggttcaaaaagtttatagattacagggtgttgatataaatgataaa
catcttgaagttgtagtaagacaaatgactagaaaagttaaagttgaggattcaggagac
acagaattgttgccaggtacaatgattgatatttttgactttaatgaagctaatgatagt
atagaagctaacggtggcgaaccagcaaaaggaagaattgctttacttggaataacaaaa
gcagctcttgcaacagattcattcttatcagcagcatctttccaagaaaccactagggtc
cttacagatgcggcaattaaaggtaaaattgatccactagtaggtcttaaggaaaatgtt
attattggtaaacttataccagctggtacaggtatggcaaggtacaaaaatataagtata
gaagatgaaaaacgagaagataatgaaattttagttaaagaaagttaa
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integrated database retrieval system