Clostridium perfringens 13: CPE1672
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Entry
CPE1672 CDS
T00074
Name
(GenBank) conserved hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPE1672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpe03019
]
CPE1672
Messenger RNA biogenesis [BR:
cpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPE1672
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
EMC3_TMCO1
PsaN
KH_2
RIC3
DUF1400
FeoB_associated
DUF4083
Motif
Other DBs
NCBI-ProteinID:
BAB81378
UniProt:
Q8XJT1
LinkDB
All DBs
Position
complement(1946257..1947849)
Genome browser
AA seq
530 aa
AA seq
DB search
MTPFYAKCFYRENKRGGVYMVVGILIGIIILGVVGFIQYTLIQKASKNRVESLEKEASLT
LEEAKREAESTKKEAILEAKEEVHKLRADLDKETRDRRNEIQRFERRLIQREESLDKKGE
MLEKREDSINKKSIEIQELEERVQNLYGEQRAELERISNLSSEDARTLLLDEVRREIKHE
SAMLIKELETKAKEEADKKSREIITTAIQRCAADHVSETTVHVVALPNDEMKGRIIGREG
RNIRTLETLTGVDLIIDDTPEAVILSSFDPIRREVARIALEKLIVDGRIHPARIEEMVER
AIKDVENDIKEEGEQATFETGVHGLHPEIIKLLGRLKYRTSYGQNVLKHSIEVSYLAGLM
ASELGLDVNLARRAGLLHDIGKGVDQEYEGPHAVIGGELAKKYHESPAVVNAIAAHHGDT
EMQTLEAVLVQAADAISAARPGARRETLEAYIKRLEKLEEIATSYEGVEKSYAIQAGREI
RIMVKPDQVDDAGAIEMARNIVKKIEEQLEYPGQIKINVIRETRAVDYAK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgacacctttctacgcgaagtgtttttatagagagaataagcgaggaggtgtttatatg
gtagtaggaatacttataggaataataatattaggggtagtagggtttattcaatacact
cttatacaaaaagcttcaaaaaatagggtggaaagcttagaaaaagaagctagtttaaca
cttgaggaggctaaaagagaagctgaatcaacaaagaaagaagccatattagaagctaaa
gaagaggtgcacaaactaagagcagatcttgataaagaaactcgtgacagaagaaatgag
attcaaaggtttgaaagaagacttatccaaagggaagagtcattagataaaaaaggtgaa
atgcttgaaaaaagagaagatagcataaacaaaaaatctatagagattcaagaacttgaa
gaacgtgtacaaaatttatacggtgaacaaagagctgaacttgagagaatttcaaatctt
tcaagtgaagacgcaagaacattattattagatgaagtaagaagagaaataaaacatgaa
tcagctatgctaatcaaagaacttgagactaaggccaaagaagaagctgacaaaaaatca
agagaaataattactactgctattcaaagatgtgcagcagatcatgtttctgaaactaca
gtacatgttgttgccctacctaatgatgaaatgaaaggaagaatcattggtagagaaggt
agaaatataagaactttagaaacattaacaggagttgatttaataatagatgatactcca
gaggctgttattctttcaagcttcgatccaataagaagagaagttgctagaatagcttta
gaaaaattaattgtagatggaagaattcatccagctagaattgaagaaatggtagaaaga
gctattaaagatgtagaaaatgacattaaggaagagggagaacaagcaactttcgaaact
ggtgttcatggattacatccagaaataattaagcttctaggaagactaaagtacagaaca
agttatggtcaaaatgttttaaaacattcaatagaggtttcatatttagcaggattaatg
gcatctgaattaggtttagatgtaaatctagctagaagagcaggtcttttacatgatata
ggtaaaggggttgaccaagaatatgaggggcctcatgctgttataggtggagaacttgca
aagaaatatcatgaatcaccagctgtggtaaatgctatagcagcccatcatggtgataca
gaaatgcaaactcttgaagccgtacttgttcaagcagcagatgctatatcagcagctaga
cctggtgcaagaagagaaactttagaagcttatattaagagattagaaaaattagaagaa
atagctacttcatatgaaggtgtagaaaagtcatatgccattcaagctggaagagaaatt
agaattatggttaaaccagatcaagttgacgatgcaggggcaattgagatggcgagaaat
attgttaagaagatagaagaacaattagagtatccaggtcaaatcaagataaatgtaata
agagaaacccgtgcagttgactatgctaaataa
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