Chitinophaga pinensis: Cpin_3242
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Entry
Cpin_3242 CDS
T00959
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Cpin_3242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpi03400
]
Cpin_3242
Enzymes [BR:
cpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Cpin_3242
DNA repair and recombination proteins [BR:
cpi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Cpin_3242
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACU60709
UniProt:
A0A979GUD3
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All DBs
Position
3993510..3995483
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AA seq
657 aa
AA seq
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MPDYIEPMLCTPLKTLPPGDEYIYEIKWDGYRAISSVRKKKARIHSRKGLNYSARYPLVA
EALAAIGHDCIIDGEIVVPGKDGKPSFNAVQRYNGKRSAIYYYLFDLLWLDGQDLTGLPL
TQRQELLRMLIKEGPVLKLSTVYTDGGALFNRMQEQGMEGVVGKKADSAYASGKRGDAWI
KVKLSKRQEFVIVGYTEADSPSRFRSLMFGEYLPTGELVYVHHSGGGWSAEEGKALFARL
KQLEITKKPFINTAKTETRQHFVKPQLVAEFDLSGFYTPSGTIRHPAPFKGLREDKDAKE
VIREEEGDPIISPVEAPGASRATYLNTDSNWKAVDKEQEGAEWMDFTMRKCTIRVHDLER
ELWTDVPKGKLLVYYNRLSHLILPYIKDRPQSLHLKLTHAGAPRFFIKDMEGRQPECATV
FTDTRRTKKAGKRDQIDYLVANNAETLLFMVDTGCIDINPWASRIQQPEYPDYLWLDLDP
TSPEKLKGDALIKAENRGFADAIEVARAVKEVLDKHRLKSFVKTSGKTGIHIYIPCEGFG
FRQARLLASVLASEVHDLVPEISTVNTNINQRGSRVYIDAGQNDYADTLAAPYCIRPYHQ
PLVSTPLSWREVNASLDRWAFTVDTIERRLDRKGDLWGDLGDGKVKAANGKVLRRMF
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcccgattatatagaacccatgctttgtacgcccctgaaaacgcttccaccaggggat
gaatatatttacgaaataaaatgggacggctaccgggctatatcctccgtacgcaagaaa
aaagcccgcatccactcccggaaaggactcaactacagcgcccgctacccgctggtagcc
gaagccctggccgctattggccatgactgcataatagacggtgaaatagtagtgcctggt
aaagacggcaaacccagcttcaatgccgtgcaacgctacaacggcaagcgatcggccatt
tactattacctttttgacctgctatggctggatgggcaagaccttacgggcctgccgctt
acccagcgccaggagctgctgcggatgctgataaaagaaggcccggttttaaagctaagc
acggtttacactgatggcggggcgctgtttaatcgaatgcaggagcagggtatggaaggc
gtagtaggcaagaaagccgacagcgcctacgcctccggcaaaagaggtgacgcctggata
aaagtgaagctcagtaagcggcaggagtttgttattgtaggctataccgaagccgactca
cccagccggttccgttccctcatgttcggcgaataccttcctactggggagttggtatac
gtacaccactccggagggggctggtcagccgaagaaggcaaggccctcttcgcgcggtta
aagcaactcgaaataacaaagaaacctttcattaacactgccaaaaccgaaacgcgtcaa
cactttgtaaaaccgcaactggtagctgaatttgacctatccggcttttacaccccgtct
ggtaccattcgccatccggcacccttcaaaggactgcgggaagacaaagacgcgaaagaa
gttatacgtgaagaagaaggcgatcccataatttcgcctgtggaggcgcctggtgcttcg
agagccacctatttgaacacagacagcaactggaaagccgtagacaaagaacaggaaggc
gcggaatggatggactttaccatgcgcaaatgcaccattcgtgttcacgacctcgaacgt
gaactgtggaccgatgtaccaaagggcaagctgctggtatattacaaccgcctatcgcac
ctgatactgccctacatcaaagaccggccccaatcgctccacctgaagctgacccatgcc
ggagcaccacgcttctttattaaagacatggagggccgtcagccggaatgtgctaccgta
ttcaccgatacacgccgtacaaagaaagccggaaagcgcgaccagatcgactacctggta
gccaacaacgccgagacgctgctgtttatggtggataccggctgtatagatatcaacccc
tgggcttcccggatacaacagccggagtatccggattacttgtggcttgatcttgatcct
acgagtccggaaaagctgaaaggtgatgcgctgataaaagcagagaaccgtggttttgct
gatgcgatagaggtggcccgcgctgtaaaggaagtgctggataagcaccggctgaagagt
tttgtgaaaacttcgggtaaaacggggatacatatttatataccctgcgaggggtttggt
tttcgtcaggcccggttactagcaagcgtgctggcatcggaggtgcatgacctggtgccg
gagatcagtacggtgaatacaaatatcaaccagcggggttcccgcgtgtacatcgatgcg
gggcagaatgattacgcggatacgctggccgcgccttattgcatacggccatatcatcag
ccgctggtaagcacgccgctctcgtggcgggaagtgaatgcttcgctggaccgatgggcg
tttacggtggatacgattgaacgtcgactggataggaaaggggatctgtggggggatttg
ggggatgggaaggtgaaggcggcgaatgggaaggtgttgaggaggatgttttaa
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