KEGG   Chitinophaga pinensis: Cpin_3242
Entry
Cpin_3242         CDS       T00959                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cpi  Chitinophaga pinensis
Pathway
cpi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Cpin_3242
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cpi03400]
    Cpin_3242
Enzymes [BR:cpi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Cpin_3242
DNA repair and recombination proteins [BR:cpi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Cpin_3242
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ACU60709
UniProt: A0A979GUD3
LinkDB
Position
3993510..3995483
AA seq 657 aa
MPDYIEPMLCTPLKTLPPGDEYIYEIKWDGYRAISSVRKKKARIHSRKGLNYSARYPLVA
EALAAIGHDCIIDGEIVVPGKDGKPSFNAVQRYNGKRSAIYYYLFDLLWLDGQDLTGLPL
TQRQELLRMLIKEGPVLKLSTVYTDGGALFNRMQEQGMEGVVGKKADSAYASGKRGDAWI
KVKLSKRQEFVIVGYTEADSPSRFRSLMFGEYLPTGELVYVHHSGGGWSAEEGKALFARL
KQLEITKKPFINTAKTETRQHFVKPQLVAEFDLSGFYTPSGTIRHPAPFKGLREDKDAKE
VIREEEGDPIISPVEAPGASRATYLNTDSNWKAVDKEQEGAEWMDFTMRKCTIRVHDLER
ELWTDVPKGKLLVYYNRLSHLILPYIKDRPQSLHLKLTHAGAPRFFIKDMEGRQPECATV
FTDTRRTKKAGKRDQIDYLVANNAETLLFMVDTGCIDINPWASRIQQPEYPDYLWLDLDP
TSPEKLKGDALIKAENRGFADAIEVARAVKEVLDKHRLKSFVKTSGKTGIHIYIPCEGFG
FRQARLLASVLASEVHDLVPEISTVNTNINQRGSRVYIDAGQNDYADTLAAPYCIRPYHQ
PLVSTPLSWREVNASLDRWAFTVDTIERRLDRKGDLWGDLGDGKVKAANGKVLRRMF
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgcccgattatatagaacccatgctttgtacgcccctgaaaacgcttccaccaggggat
gaatatatttacgaaataaaatgggacggctaccgggctatatcctccgtacgcaagaaa
aaagcccgcatccactcccggaaaggactcaactacagcgcccgctacccgctggtagcc
gaagccctggccgctattggccatgactgcataatagacggtgaaatagtagtgcctggt
aaagacggcaaacccagcttcaatgccgtgcaacgctacaacggcaagcgatcggccatt
tactattacctttttgacctgctatggctggatgggcaagaccttacgggcctgccgctt
acccagcgccaggagctgctgcggatgctgataaaagaaggcccggttttaaagctaagc
acggtttacactgatggcggggcgctgtttaatcgaatgcaggagcagggtatggaaggc
gtagtaggcaagaaagccgacagcgcctacgcctccggcaaaagaggtgacgcctggata
aaagtgaagctcagtaagcggcaggagtttgttattgtaggctataccgaagccgactca
cccagccggttccgttccctcatgttcggcgaataccttcctactggggagttggtatac
gtacaccactccggagggggctggtcagccgaagaaggcaaggccctcttcgcgcggtta
aagcaactcgaaataacaaagaaacctttcattaacactgccaaaaccgaaacgcgtcaa
cactttgtaaaaccgcaactggtagctgaatttgacctatccggcttttacaccccgtct
ggtaccattcgccatccggcacccttcaaaggactgcgggaagacaaagacgcgaaagaa
gttatacgtgaagaagaaggcgatcccataatttcgcctgtggaggcgcctggtgcttcg
agagccacctatttgaacacagacagcaactggaaagccgtagacaaagaacaggaaggc
gcggaatggatggactttaccatgcgcaaatgcaccattcgtgttcacgacctcgaacgt
gaactgtggaccgatgtaccaaagggcaagctgctggtatattacaaccgcctatcgcac
ctgatactgccctacatcaaagaccggccccaatcgctccacctgaagctgacccatgcc
ggagcaccacgcttctttattaaagacatggagggccgtcagccggaatgtgctaccgta
ttcaccgatacacgccgtacaaagaaagccggaaagcgcgaccagatcgactacctggta
gccaacaacgccgagacgctgctgtttatggtggataccggctgtatagatatcaacccc
tgggcttcccggatacaacagccggagtatccggattacttgtggcttgatcttgatcct
acgagtccggaaaagctgaaaggtgatgcgctgataaaagcagagaaccgtggttttgct
gatgcgatagaggtggcccgcgctgtaaaggaagtgctggataagcaccggctgaagagt
tttgtgaaaacttcgggtaaaacggggatacatatttatataccctgcgaggggtttggt
tttcgtcaggcccggttactagcaagcgtgctggcatcggaggtgcatgacctggtgccg
gagatcagtacggtgaatacaaatatcaaccagcggggttcccgcgtgtacatcgatgcg
gggcagaatgattacgcggatacgctggccgcgccttattgcatacggccatatcatcag
ccgctggtaagcacgccgctctcgtggcgggaagtgaatgcttcgctggaccgatgggcg
tttacggtggatacgattgaacgtcgactggataggaaaggggatctgtggggggatttg
ggggatgggaaggtgaaggcggcgaatgggaaggtgttgaggaggatgttttaa

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