KEGG   Chrysemys picta (western painted turtle): 101937304Help
Entry
101937304         CDS       T04662                                 

Gene name
LIG1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cpic  Chrysemys picta (western painted turtle)
Pathway
cpic03030  DNA replication
cpic03410  Base excision repair
cpic03420  Nucleotide excision repair
cpic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpic00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    101937304 (LIG1)
   03410 Base excision repair
    101937304 (LIG1)
   03420 Nucleotide excision repair
    101937304 (LIG1)
   03430 Mismatch repair
    101937304 (LIG1)
Enzymes [BR:cpic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     101937304 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     101937304 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     101937304 (LIG1)
DNA replication proteins [BR:cpic03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    101937304 (LIG1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     101937304 (LIG1)
DNA repair and recombination proteins [BR:cpic03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     101937304 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     101937304 (LIG1)
   MMR (mismatch exicision repair)
    Other MMR factors
     101937304 (LIG1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 101937304
NCBI-ProteinID: XP_008173935
LinkDB All DBs
Position
Un
AA seq 948 aa AA seqDB search
MQRPITSFFQPMKAVKEEEKIRPPAEEDSTSQVSEAAVPQRNGLSLCVDSPVKSTAKRPL
RRVLESDSDEEEAVLTAQAEVSPIQDKSSEKASSKQEPMQTPQSDLSADSPSPSSSHSAG
DSPALSDSPAIGHAGIPRRRTARKQIPKRKIELPTSRENNRHEEPSAKRCREEQGPGDEA
GRRAKEEDAMEMQEVKGQHSAEVNGASEEGAVNKGEEDHAGGGAQEKPEPPKPSRAISSF
FAPKKVPVAKAGKADERAAVKIPPAPTGSATVSSNGSDGTAGSFSKPAVPLDPVEYNPSK
SSYHPVQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSPSDILPC
IYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAESSRSNQ
RTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITRSLGGKL
RIGLAEQSVLSAIAHAVSLTPPGQGFPPEVLDAGQGKSAETRKAWLEEQTQILKQTFCEL
PSYDIIVPILLEHGVESLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFTCEYKYD
GERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGSVRSCILDAEAVAWDPEKR
QIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDILYLNGESLVKEPFSRRRQLLHESFVETE
GELMFATSMDTCSLDEISEFLDQSIKDSCEGLMVKTLEVDATYEIAKRSHKWLKLKKDYL
EGVGDTLDLVVIGAYLGKGKRVGMYGGFLLACYDEESEEYQSICKIGTGFTEESLEKHYN
FLKDHVLEKPRPYYRWDSSTEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDEEKGISL
RFPRFLRVRDDKKPEEATTSSQVAELYRQQQQIQNQQPAEKAEEEDFY
NT seq 2847 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgcccgatcacgtcatttttccagcccatgaaggcagtgaaggaggaggagaag
atcagaccgccagcagaagaggactcaaccagccaggtgtcagaggcagctgtgccgcag
agaaatggcctaagcctctgtgtggactccccagtgaaatccactgccaagaggcccctg
cgtcgggtcttggagagcgacagtgacgaggaggaggccgtgctgacagcccaagcagag
gtttctcccatacaggacaaaagctcagagaaagctagcagcaagcaggagcctatgcaa
actcctcagtctgatctctctgcggatagcccctcaccaagcagtagccactccgctgga
gacagcccggccctttctgactcccctgccatcggccatgctggcatccccagacgcagg
accgctcgcaagcagatccccaaacgcaaaatagagttgccaactagcagggagaacaac
aggcatgaggagccgagtgccaagagatgccgggaagagcaaggcccaggagatgaggca
ggcaggagagcaaaggaagaagacgccatggaaatgcaagaggtgaaaggtcagcattcg
gctgaagttaatggcgcttcagaggagggggctgtgaacaagggagaagaggaccacgct
ggagggggagcccaggagaagcctgagccacccaagcccagcagagccatctccagcttc
tttgcccccaagaaggtgccagtggcaaaggcagggaaggcagatgaacgtgcagcagtg
aaaataccacctgccccaactggctcagccacagtgagcagcaatgggagtgatggcaca
gctggcagtttctccaagccagctgtgccactggaccccgtggagtacaatccttcgaag
agcagctatcaccctgtccaggacgcctgctgggggcatggtcagagggtcccctacctg
gctgtggctcggacatttgagcggatcgaggaggtgtctgcccggctgaagaacattgag
accctgagcaacctcttccgctcagtgatcgccctgtcaccatctgacattctgccctgc
atctacctctgtctgaaccgcctgggccctgcctacaaggggctggagctgggcatcggc
gagaccattctcatgaaggctgttgcacaggcaacaggacgccagctggatcagatcaaa
gccgaggcccaggagaagggggatctgggcttggtagctgagagcagccgcagcaaccag
cgcaccatgttcacgccacccaagctgagtgctgccggagtcttcagcaagctacaagag
attgccaggatgacaggcagtgcttccatgaacaagaagatcgacatcatcaaagggctg
tttgtggcctgccggcactcggaagctcgctacatcactcggtccctgggcgggaagctt
cggattgggctggcagagcagtcagtgctgtcagccattgcccatgccgtgtctcttact
cccccaggacaagggtttcccccagaggtgctggatgctggccagggcaaatctgcagag
acacgcaaagcctggctggaggagcagacccagatcctcaagcagaccttctgtgagttg
cctagctatgacatcatagttcccatcctgctggagcatggagtggagagcctgccacag
cactgcaagatcaccccagggatcccgctgaagcccatgctggcccagcccaccaagggc
attggggaggtgctgaagcgctttgaggaggctgccttcacctgcgagtacaagtatgat
ggggagcgagcccagatccacatcctggagaatggggatgtgcacatctacagccgcaac
caggaggacaacacctccaaataccctgacatcatcagtcgcatccccaaggtgaagaag
ggcagcgtgcggtcatgtatcctggatgctgaggccgtggcctgggaccccgagaagagg
cagattcaacccttccaggtcctgaccacgcggaaacgcaaggatgtggaagctgctgag
atcaaagtgcaggtgtgtctgtatgccttcgacattctgtacctcaatggggagtcccta
gtgaaggagccattctccaggcgccgtcagctgctgcatgagtcttttgtggagacagag
ggggagttaatgtttgccacctccatggacacctgcagcctggacgagatctctgaattt
cttgaccagtccattaaagactcctgcgagggactcatggtcaagaccctggaggtggat
gccacgtacgagatcgctaagagatcccacaagtggctgaagctgaagaaggattacctg
gaaggtgttggtgacactctggacttggtggtgattggtgcctatctgggcaagggcaag
cgagtaggcatgtatggcggcttcctgttggcctgctatgatgaggagagtgaggagtac
cagagcatctgcaagattgggactggcttcacagaagagagcctggagaagcattacaac
ttcctgaaggaccatgtgctagagaagccacggccctattaccgctgggacagcagcact
gagcccaaccactggctggcagctgtgcaggtgtgggaagtgaagtgtgctgacctgtcc
atctcgcctgtgcacaaggcagctataggcctggtggatgaggagaagggcatctccctg
cgctttccccggttcctgcgcgtgcgtgatgataagaagcctgaggaagccaccaccagt
tcccaggtggctgagctctacaggcagcagcagcagattcagaaccagcagcctgcagag
aaagctgaggaggaggacttctactag

DBGET integrated database retrieval system