Crassostrea gigas (Pacific oyster): 105333288
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Entry
105333288 CDS
T03920
Name
(RefSeq) retinoic acid receptor RXR isoform X1
KO
K08524
retinoid X receptor alpha
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105333288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105333288
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
crg03310
]
105333288
Transcription factors [BR:
crg03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
105333288
Nuclear receptors [BR:
crg03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
105333288
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
105333288
NCBI-ProteinID:
XP_011434492
UniProt:
A0A8W8L0Y5
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Position
LG7:19058973..19076216
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AA seq
476 aa
AA seq
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MVANFKPIETESSLHGLWIPPITDSLDGVSSNSNMSTTANMGMGMSPSMGISSMAQMGSP
PDIKPDINSLVSQSFYPYGIQHPMSQSQASPGSQPMMSPGLHSPSSSVTSPSMMSIGSPG
SASSPPGSNPHMPHSNLNSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACR
DDRNCIIDKRQRNRCQYCRYMKCLNMGMKREDVKCSTDAGRQGSSVQEERQRVKEKGEGE
VESTSTANSDMPVEKILEAELAVEPKTDTYIDAQKDTVTNICQAADKQLFTLVEWAKRIP
HFTELPLEDQVILLRAGWNELLIAGFSHRSIVVKDGILLATGLHVHRSSAHQAGVGTIFD
RVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGVSAVSEVEQLREKVYASLEEYCKMH
YPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLLEMLESPSPSST
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggttgctaatttcaaacctatagagacggaaagtagcttgcatgggttgtggattccg
ccaataacagattctctggatggggtaagcagcaactccaacatgtcaactactgctaat
atggggatgggaatgtctccatcaatgggaatcagctcaatggcacagatgggatctcct
ccagacattaaaccagatatcaactctctagtgtcccagtcattttatccttatggaata
cagcaccctatgtcccagtcacaggcatcccctgggtctcaaccgatgatgtcaccaggc
cttcactcaccctcctcctcagtaacatccccttccatgatgtccatcggttcccctggc
tcagcatcctcacccccggggtccaatcctcacatgccacacagtaatctcaatagcaaa
catatctgtgctatttgtggtgacagagcctctgggaagcactatggagtttacagttgt
gaaggttgtaaaggatttttcaaaagaacagttcgtaaggacttgacgtatgcctgtcga
gatgaccgcaactgtatcattgacaaaaggcagaggaacagatgtcagtactgccgatac
atgaagtgtctaaacatggggatgaagagagaagatgttaaatgcagcaccgatgcaggg
cgccaaggatcatctgtacaagaggaaagacagcgagtgaaggagaagggagagggggag
gttgagagcaccagcactgccaactcagacatgccagtagagaaaatcctggaggctgaa
ctagctgtggaacccaagacagacacctacatagatgctcagaaagatacagtgacaaac
atttgtcaggcagcagacaagcaactgttcactttggtggaatgggccaaacgcatacct
cacttcaccgagttgcctctagaagatcaggtcattctactgcgtgcaggttggaatgag
ctgctgatagctggcttctcacatcgatctatcgtggtaaaggatggtatactgctggcc
accggcctccatgtacacaggagcagcgctcaccaagcaggtgtcggaaccatatttgac
cgtgtcctcacagaactcgtcgctaaaatgcgggaaatgaaaatggataagacagagttg
ggatgtttaagagctatcgtactgtttaatccagatgctaaaggtgtatctgctgtctct
gaagtggaacagttgagagagaaagtgtatgcttcactggaagaatactgcaaaatgcac
taccccgacgaaccaggcaggtttgccaaattactgcttcgattgccagcgctcagaagt
atagggctcaagtgtttggaacacttattcttcttcaaattaattggtgatactcccata
gacactttccttctagaaatgttggaaagtccatccccaagcagcacttga
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