KEGG   Crassostrea gigas (Pacific oyster): 105336692
Entry
105336692         CDS       T03920                                 
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03022  Basal transcription factors
crg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105336692
  09124 Replication and repair
   03420 Nucleotide excision repair
    105336692
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crg03021]
    105336692
   03400 DNA repair and recombination proteins [BR:crg03400]
    105336692
Transcription machinery [BR:crg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     105336692
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     105336692
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 ANT
Other DBs
NCBI-GeneID: 105336692
NCBI-ProteinID: XP_011439429
LinkDB
Position
LG7:33130580..33142579
AA seq 459 aa
MASVSKKLECKDLHGYLKTLPSTILDKLYNHPATCLAVFRQLPQLSKHYVMRMLFIEQPV
SQSAVGLWVTNKHNEEHKFAAKVLSELRVWHEQQMQGGLLGWVLNGTFRSNMKVALLGGG
MDSQFTGGPLPPDKHAKDVPFLDKYALERWECVLHFMVGSTEGTEGVSKDIIDVLLNAGL
MTMDGVDPMPSITPAGFQFLLMDIGSQVWYFMLQYLDTVEARGMDLIDCLSFLFQLSFST
LGKDYSTENMNEGQQRFLQHLREFGLVYQRKRKIQRYYPTRLAINLASGQSDFTSVGKNT
GYLMVETNYRVYAYTDSPLQVALVALFCEMLYRFPTFSVGNLTRVSVRDALIRGITADQI
ISFLKTHAHPKMTKNTPVIPSTVTDQIRLWELERDRFKFMEGVLYDQFLSQNDFELLRDY
AKDLGVLLWDNAIKRVMVVTKGGHDDVKRYWKRQKQSNS
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggcaagtgtatcaaagaaattagaatgcaaggacttacacggctatttaaaaacttta
cctagtaccatactcgacaaactttacaaccaccctgctacctgtcttgctgtgtttagg
cagcttcctcaactttccaagcattatgtaatgcgaatgctctttatcgagcaaccggta
tcccaatcagctgtaggactctgggttacaaataaacataatgaggaacacaaatttgct
gcgaaagttctctcagagctgagggtttggcacgaacagcagatgcagggaggcctcctg
ggatgggttttgaatggcacttttagatcaaacatgaaagttgctctcctgggaggggga
atggactcgcagtttactgggggacctctgcctcctgataaacatgccaaagatgttccc
tttcttgataaatatgctcttgagagatgggagtgtgttcttcattttatggtgggttct
actgaaggaacagagggagtcagtaaggacatcattgacgttctgctcaatgcaggcctc
atgacaatggatggtgtggaccccatgccctccatcaccccagcaggtttccagttcttg
ctcatggacatagggtcccaagtttggtattttatgctgcagtacttggatacagttgag
gctcgtggtatggaccttatagactgtttatcgtttttgtttcaacttagtttttcaaca
cttggaaaggactattccacagaaaatatgaatgaaggacaacaaagatttttgcaacat
ttgagagaatttggacttgtgtatcaaaggaagaggaaaatccagcggtactatcccacc
agactggcaatcaatctagcctccggacagtcagacttcacctctgtcgggaagaacacg
ggttatctgatggtggagaccaactacagggtgtatgcctacacagattctcccctgcaa
gtggctttggttgccttgttttgtgaaatgttgtacaggtttccgacgttttctgtgggg
aacttgactcgtgttagtgtacgagatgcattaatccgaggaattacagcagatcagata
atatcctttttaaaaacccatgctcatccaaaaatgaccaaaaatactccagtcattcca
tcaacagtgactgaccagatcagactatgggaattggagcgtgaccgctttaaattcatg
gaaggcgtcctatatgaccagtttctgtcgcagaacgactttgagctgctgagggattat
gccaaggatttgggagttctactctgggacaatgcaatcaagagagtaatggttgttaca
aagggtggccatgacgacgtgaagcgctactggaagagacagaagcagtccaactcctga

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