Crassostrea gigas (Pacific oyster): 105336692
Help
Entry
105336692 CDS
T03920
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03022
Basal transcription factors
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105336692
09124 Replication and repair
03420 Nucleotide excision repair
105336692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105336692
03400 DNA repair and recombination proteins [BR:
crg03400
]
105336692
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105336692
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105336692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ANT
Motif
Other DBs
NCBI-GeneID:
105336692
NCBI-ProteinID:
XP_011439429
LinkDB
All DBs
Position
LG7:33130580..33142579
Genome browser
AA seq
459 aa
AA seq
DB search
MASVSKKLECKDLHGYLKTLPSTILDKLYNHPATCLAVFRQLPQLSKHYVMRMLFIEQPV
SQSAVGLWVTNKHNEEHKFAAKVLSELRVWHEQQMQGGLLGWVLNGTFRSNMKVALLGGG
MDSQFTGGPLPPDKHAKDVPFLDKYALERWECVLHFMVGSTEGTEGVSKDIIDVLLNAGL
MTMDGVDPMPSITPAGFQFLLMDIGSQVWYFMLQYLDTVEARGMDLIDCLSFLFQLSFST
LGKDYSTENMNEGQQRFLQHLREFGLVYQRKRKIQRYYPTRLAINLASGQSDFTSVGKNT
GYLMVETNYRVYAYTDSPLQVALVALFCEMLYRFPTFSVGNLTRVSVRDALIRGITADQI
ISFLKTHAHPKMTKNTPVIPSTVTDQIRLWELERDRFKFMEGVLYDQFLSQNDFELLRDY
AKDLGVLLWDNAIKRVMVVTKGGHDDVKRYWKRQKQSNS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgtatcaaagaaattagaatgcaaggacttacacggctatttaaaaacttta
cctagtaccatactcgacaaactttacaaccaccctgctacctgtcttgctgtgtttagg
cagcttcctcaactttccaagcattatgtaatgcgaatgctctttatcgagcaaccggta
tcccaatcagctgtaggactctgggttacaaataaacataatgaggaacacaaatttgct
gcgaaagttctctcagagctgagggtttggcacgaacagcagatgcagggaggcctcctg
ggatgggttttgaatggcacttttagatcaaacatgaaagttgctctcctgggaggggga
atggactcgcagtttactgggggacctctgcctcctgataaacatgccaaagatgttccc
tttcttgataaatatgctcttgagagatgggagtgtgttcttcattttatggtgggttct
actgaaggaacagagggagtcagtaaggacatcattgacgttctgctcaatgcaggcctc
atgacaatggatggtgtggaccccatgccctccatcaccccagcaggtttccagttcttg
ctcatggacatagggtcccaagtttggtattttatgctgcagtacttggatacagttgag
gctcgtggtatggaccttatagactgtttatcgtttttgtttcaacttagtttttcaaca
cttggaaaggactattccacagaaaatatgaatgaaggacaacaaagatttttgcaacat
ttgagagaatttggacttgtgtatcaaaggaagaggaaaatccagcggtactatcccacc
agactggcaatcaatctagcctccggacagtcagacttcacctctgtcgggaagaacacg
ggttatctgatggtggagaccaactacagggtgtatgcctacacagattctcccctgcaa
gtggctttggttgccttgttttgtgaaatgttgtacaggtttccgacgttttctgtgggg
aacttgactcgtgttagtgtacgagatgcattaatccgaggaattacagcagatcagata
atatcctttttaaaaacccatgctcatccaaaaatgaccaaaaatactccagtcattcca
tcaacagtgactgaccagatcagactatgggaattggagcgtgaccgctttaaattcatg
gaaggcgtcctatatgaccagtttctgtcgcagaacgactttgagctgctgagggattat
gccaaggatttgggagttctactctgggacaatgcaatcaagagagtaatggttgttaca
aagggtggccatgacgacgtgaagcgctactggaagagacagaagcagtccaactcctga
DBGET
integrated database retrieval system