KEGG   Coccomyxa subellipsoidea: COCSUDRAFT_40196Help
Entry
COCSUDRAFT_40196  CDS       T02914                                 

Definition
(RefSeq) hypothetical protein
  KO
K10777  
DNA ligase 4 [EC:6.5.1.1]
Organism
csl  Coccomyxa subellipsoidea
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:csl00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    COCSUDRAFT_40196
Enzymes [BR:csl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCSUDRAFT_40196
DNA repair and recombination proteins [BR:csl03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     COCSUDRAFT_40196
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
AA seq 1267 aa AA seqDB search
MKPKPSELRFKTLCDFFDACASRKKSSRKKELLRDFANKFIERGSSDVYEIYRLMAPSLD
KERDHYNLREANLVRVLIKACLLDPKTSSAAKRAENWRQAGVKNAGQFSNVMEEYLFRTC
CGKQRGMSGEAELTVGELNDILNKLAGGGGEEQVKLFTHLIQITTATQMRWIVQIVLRDL
KIGLSETSILKEYHVDAVERYNVTCDFPGVIRELTDPHKRFPFQDIKVGKPAKPQLARAV
KGPEEAFNIMKGRPFVVETKFDGERMQVHVMEDEVQYYSRRGIEHGTYSHYTMLDSFIRK
QLRETNVILDGEVVVWNKTKKKFEPFGGMKGAVLAAKDNKGPDEKLEMNGWHGDTMTSDP
DYETPFVKDLELVFVVFDILYLRDQSVINRTLLERHELLKELVIPAPAEGHPVSCAMTGR
MVCLLPGAPLITGVPGSKLSYVLDDIQEKFEESIRVNEEGIVVKAADSPWRCNDRGMAWL
KIKADYVHKVEIDAVIIGAKFGTGRRGGAIAEYLLALAEVPQGGTTEPSTFVSFCVVGTG
VNDADRDTLAKRLEPLFVDNVKGKNCVPRCYRTTGMPKERPDVWIKDPTRSVVLQVQADV
RTIVSKQFASRHSLRFPRVQRVRWDKGPLDIQTDQELWDIVESNQGAIVGGEGHDMESPA
GKGKGRGKKRAVKGAATPAQQRSKVVEQFLPTDVSHIRRECDALRDSLVYFVPAPVKTAK
YPKKYLEEVVARLGGKVTQNYVPRVTHVIAQDANDPFFKARRDKVDMISVEWLLECAAKQ
ALISLRPHHYMHLTRDTRNNVPNVCIYGDMYYEDVSAIDVKVILNNHAHLEPGALDDLAA
LMADEAGEPQPGVASRADGTAQLYKRLKRKPGVEDIMLAVDRELAEYGLLDSTACLFRGC
HICLLQLPDDTCPAAKDSAQESAAAAKRELAALQAQRRKLEVMLHGGKAQDAIDMSTTHI
VVIPPANCAMPRLSPADLLGILHSEKGGTAGLTTLRKLLAAGEVHIVMQSWLEESLEALR
QAAEGQAVRRASELRHTVPLSSDSAPDTVADAPEDIPRNVDSYVLTFAAASFEDWGWEDF
GVTTAATPVTSGKRGRSTSPGEGTAGTRAKRGRGSRSGKTAGSTRGRGGKAAKPPPLAPD
VGKKPSRGGAGRGRGRGRKKYVIDDTSSSSDGEQPDMDASVSAHGHQSTSMLEDLLSLPI
TGNDALPAPAIGGPVFSAGSRKHRCWSSERQAGFRSSSSAGRQCSPVDTRKFTAFGRATA
FGRAAHC
NT seq 3804 nt NT seq  +upstreamnt  +downstreamnt
atgaagccgaagccgagcgagctgcgttttaagactctgtgcgactttttcgacgcttgc
gctagtcggaaaaagtcatcaaggaagaaggagcttctgagggattttgcaaacaagttc
atagagcgtggatcgtccgatgtgtacgagatctaccgcctcatggcaccctcgctggac
aaggagcgcgaccactacaatttgagagaggcaaacctggtcagggtcttgataaaagca
tgcttgttggacccaaaaacatcctctgcagcaaagagagccgagaactggcgccaggcg
ggcgtgaagaacgccgggcaattctcaaatgtcatggaagagtacctcttccggacgtgc
tgtgggaagcagaggggcatgtcaggagaggcagaactgacagtgggcgagctcaatgac
attttgaacaagctagccggcggcggcggtgaggagcaggtcaaattgttcacgcacctg
atccagatcaccacagccacacagatgcgctggattgtgcaaattgttctaagggacctc
aagattggactctcagagacgagcatcctgaaggagtatcatgtggacgctgtggagcgc
tacaatgtcacctgtgacttccctggggtcatccgagagctcactgacccgcacaagagg
tttccgttccaggacatcaaggttggcaagcctgccaagccccagctggccagagctgtg
aaggggccagaggaggccttcaacatcatgaagggcagaccattcgtggtggagaccaag
tttgatggcgagaggatgcaggtgcatgtaatggaggatgaagtgcagtactacagccgc
aggggaattgagcatggcacctactcccactacaccatgctggactctttcatcagaaag
cagctgcgagagacaaatgtcatccttgatggcgaggttgttgtctggaacaagactaag
aagaagtttgagccatttggcggcatgaagggggctgttctggcggcaaaggacaacaag
gggcccgacgagaagctggaaatgaacggatggcacggtgacacaatgaccagcgaccca
gactacgagacgccctttgtcaaggacctggagctggtctttgtggtcttcgacatcctg
tacctgcgcgaccagagtgtgatcaaccggaccctgctggagcgccacgagctgctgaag
gagcttgtgatccctgcgcctgccgagggccatccagtcagctgtgccatgactgggcga
atggtctgcctgctgccgggcgcacccctcatcaccggcgtgccgggctcgaagctctcc
tacgtactcgacgacatccaggagaagttcgaggagtccatccgcgtcaatgaggagggg
attgtggtgaaggcggcagactcgccgtggcgctgcaacgaccgcggcatggcctggctc
aagatcaaggcggactatgtgcacaaggtggagatcgacgcggtcatcatcggagccaag
tttggcaccggcaggcgaggaggcgccatcgctgaatacctgctggccctggctgaggtg
ccccaagggggcaccacagagccctccacctttgtctccttctgcgtggtgggcacaggg
gtgaatgatgcggaccgtgacacgctggcaaagaggctggagccgctgtttgtggacaat
gtgaaggggaagaactgcgtcccgcgctgctaccgcacgactgggatgccaaaagagagg
ccggacgtgtggatcaaggaccccactcgcagtgttgtcctccaggtgcaggcagacgtg
aggacaatagtgagcaagcaatttgcgtcgcgccactcgctgcgctttccgcgggtgcag
cgtgtgcgctgggacaagggccctttggacatccagaccgaccaggagctgtgggacatt
gtcgagtccaaccagggcgccattgtgggcggggagggccatgacatggagagcccggca
gggaagggcaagggccggggaaagaagcgcgcagtaaagggggcagcgacgccggcacag
cagcgcagcaaggtggtggagcagtttctgccgacggacgtgtcccacatccgccgggag
tgcgacgcgctgcgagactccctggtctattttgtgcctgctcccgtcaagaccgccaag
taccccaagaaatacctggaagaggtcgttgcgcgcctcggcggcaaggtgacccagaac
tacgtgccgcgcgtgacgcacgtgatagcgcaggacgcgaacgatcccttcttcaaggcg
cgcagggacaaggtggacatgatcagcgtggagtggctgctggagtgcgctgccaagcag
gcgctcatctccttgcggccccaccactacatgcacctcacgcgcgacacccgcaacaac
gtccccaatgtctgcatatacggcgacatgtactatgaggatgtcagcgcgattgatgtg
aaggtcatcctgaacaatcacgcccacctggagcctggggcactggatgacctggcggca
ctcatggctgatgaggctggcgagccgcagccaggagtggccagccgagcagatggcaca
gcgcagctctataaaaggctgaagaggaagccgggtgtggaggacatcatgctggcggtg
gacagggagctggcagagtatggcctgctggacagcactgcctgcctcttccgcggctgc
cacatctgcctgctgcagctgcccgacgacacctgccccgctgctaaagacagcgcccag
gagtcggctgccgctgcaaagcgcgagctggctgcactgcaagcccagcgcaggaagctt
gaggtgatgctgcatggaggcaaggcgcaggatgccatcgacatgtccaccacccacatc
gtcgtcattccccctgccaattgcgcgatgccccgcctgagccctgcagacctgctgggc
atcctgcacagcgagaaaggcggcaccgctggcctcaccaccctgcgcaagctgctcgct
gctggcgaagtgcacattgtcatgcaaagctggttggaggagagcctggaggccctgagg
caggcagcagaagggcaggctgtgcggcgtgcatcggagctgcggcatactgtgcctctg
agcagtgacagcgcgcctgatactgtagcagacgcacctgaggacatccccagaaatgtg
gactcatatgtgctcacctttgccgctgccagttttgaggactggggctgggaagatttc
ggggtgaccactgctgcgacgccggtcaccagcggcaagcggggccgcagcacgagcccg
ggagaggggaccgccggcacgcgcgctaaacgcggcagaggcagcagaagcggcaagacc
gccggcagcacaaggggcaggggcggaaaggcagccaagccgccgccgcttgcgcctgat
gtcggcaagaagcctagccggggtggcgcggggagaggccgagggagaggaaggaagaag
tacgtcattgatgacaccagcagcagcagtgatggcgagcaaccagacatggatgccagc
gtgtccgcacatggccatcagagcacgtccatgcttgaggacctgctgagcctgcccatc
acaggcaatgatgctctacctgcaccagccatcggtggacccgtcttctctgccgggtcc
aggaagcaccggtgctggagctcagagagacaggcaggcttccggagctcatcatccgca
ggaaggcagtgctcaccggtggacacacgaaagtttacagcctttggcagagccacagcc
tttggcagagcagcccactgctga

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