Cyanobacterium stanieri: Cyast_2342
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Entry
Cyast_2342 CDS
T02377
Name
(GenBank) putative exonuclease, RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
csn
Cyanobacterium stanieri
Pathway
csn03410
Base excision repair
csn03430
Mismatch repair
csn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cyast_2342
03430 Mismatch repair
Cyast_2342
03440 Homologous recombination
Cyast_2342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csn03400
]
Cyast_2342
DNA repair and recombination proteins [BR:
csn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cyast_2342
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cyast_2342
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cyast_2342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AFZ48290
UniProt:
K9YPH0
LinkDB
All DBs
Position
complement(2581169..2583328)
Genome browser
AA seq
719 aa
AA seq
DB search
MINQWNIAPKYNIPPWFQNLIQQYTKQIPSQGNFVSQLLWHRGIRTQEALSIFLDSSNYQ
PTPAAEFGQEMKRAVNRLYKAREKGEKVCIWGDFDADGITSTSVLWEGFGQFFVPEVQLS
YYIPNRLKESHGLNIPAMDRLADRGVSLIVTCDTGSTNLQEIDYARELGIDIIVTDHHTL
PEHRPEVVSIINPRYFASSHPLYHLSGVAVAYKLVEALYEAFPDIPEQPVEDLLDLVAIG
LVADLVELKGDCRYLAQEGIKRLANTRRYGVDKLLKLCKGNGDRPMDISFGIAPRINAVS
RIHGDASFCVKLLTTKDTKEAVTLAQQTEEANLNRKELQQRVLQQARKKIEDLDLSTTAV
IVLDDNQWETGVLGLVANALSQEYGRPSILLSTMKNADNNNLARGSARSVSGINLYDLVF
SQKHLLSGFGGHPFAAGLALPMENLSLFRDGINQKLKQQLDITKLQPTIDVDLTVTVAQL
TKELFRELKLIEPCGMGNPAPKLLVQNCWFSNVFHKNFSPKKGNKTIKYLVTYFNLCDRT
NTEGISGSWWGHNSGEISLNENYDVVIEFDYNKYHNQYEPRIIDLKICSSQRDSITTGKA
STFPENIALVSQNINSDKLLDEVFYQEQWLKFLGIIKYLINHQKSINIRLFQEKVSMGDR
PWKYALKTIKKLGFNYTCQDNIISFTLHTDNFNQEKYLNNLNKTIQVIQEEYIQSLWNK
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgattaatcagtggaatattgcccctaaatataatatccctccatggtttcaaaatctt
attcaacaatacactaaacaaattcccagtcagggcaattttgtttcacaacttctatgg
catcggggaatccgtacccaagaagcattaagtatttttttagatagtagtaactatcaa
cccacacctgcggctgaatttggacaggagatgaaaagggctgtaaatcgtctttataaa
gctagagaaaaaggggaaaaagtttgtatctggggtgattttgatgccgatggtattact
tctacttcggttttgtgggaaggatttgggcagttttttgtgccagaggtgcagttaagt
tattatattcccaatcgtttaaaggagtcccatggcttaaatattccagccatggataga
ctggcagacagaggagtcagtttaatagtcacttgtgacacgggcagcactaatttacag
gaaatagattacgctagggagttaggtatagatataattgtcactgaccatcatacttta
cctgaacatcgccccgaggtggtttctattatcaatccccgttattttgcatcatctcat
cctctttatcatctctcgggggtggcagtggcttataagttggtggaggctttatatgag
gcttttccagacattcccgagcaacctgtggaggatttattggatttggttgccattggt
ttagttgctgatttggtagagttgaagggggattgtcgttatcttgcccaagagggtatt
aaacgattggcaaacactcgccgctatggagttgacaaattacttaaattatgcaagggt
aatggcgatcgccccatggacatttcttttggcattgcaccacggattaatgcggtgagt
cgtatccatggagatgccagtttttgtgtcaaattgctgactaccaaagatacgaaagaa
gccgtcacccttgcccagcaaaccgaagaagccaatctcaaccgcaaagaattacaacaa
agggtattacaacaggctcgaaaaaaaattgaagatttagatttatcaaccaccgcagta
attgtcttggacgataatcaatgggaaacaggagttttgggcttagttgccaacgccctg
agccaagaatatggacgcccaagtattctgttaagtaccatgaaaaatgctgacaataat
aacttagcacgaggatcagcccgttcggtaagcggtattaatttatatgatttggttttc
tcccaaaagcatcttttatctggttttggtggacatcctttcgccgcaggtttggctttg
ccgatggaaaatttatccttatttcgagatggcataaatcagaaattaaaacaacaatta
gatataactaaactacagccgactattgatgtagatttaactgtaacggtagctcagttg
accaaagaattatttagagaattaaaattaatcgaaccttgtggtatgggtaatcctgct
cctaaattattagttcaaaattgttggttttctaatgtttttcataaaaatttttcgcct
aaaaaaggaaataaaactattaaatatttagttacttattttaatctttgtgatcgtact
aataccgagggcatttcgggtagttggtgggggcataattctggtgaaattagtctcaat
gaaaattatgacgtggttattgaatttgattataataagtatcacaatcagtatgaaccg
agaattattgaccttaaaatatgtagctctcaaagggattctatcaccactggtaaggct
tctacttttcctgaaaacatagctctagtgtctcaaaatattaattctgacaaactatta
gatgaggttttttatcaagaacaatggttaaagtttttaggaattattaagtatttaatt
aatcatcaaaaatctattaatatacgtctttttcaagaaaaagtatctatgggcgatcgc
ccttggaaatatgccttaaaaactatcaaaaaactaggatttaattatacttgtcaagat
aatattatttcttttactctccacacggacaattttaaccaagaaaaatatttaaataat
ttgaataaaaccatccaagttatccaagaagaatacatacaatctctatggaacaaataa
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