Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Cst_c22780
Help
Entry
Cst_c22780 CDS
T02440
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
css
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Brite
KEGG Orthology (KO) [BR:
css00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
css03016
]
Cst_c22780 (rtcB)
Enzymes [BR:
css01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cst_c22780 (rtcB)
Transfer RNA biogenesis [BR:
css03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cst_c22780 (rtcB)
Prokaryotic type
tRNA splicing ligases
Cst_c22780 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGC69238
UniProt:
L7VUH9
LinkDB
All DBs
Position
complement(2470646..2471752)
Genome browser
AA seq
368 aa
AA seq
DB search
MILVKGKYNTAKIFTCNVESGALDQIKELCDQEFVKDSIIRIMPDVHEGIGCTIGTTMTI
TDKIVPNLVGVDIGCGMETVKLRQRNIDFKKLDRIIYDYIPSGFDIRKKPHKYAEYIDLS
RLACKNHVNLDRARLSIGTLGGGNHFIEVNRDSHDNLYLVVHTGSRHLGKQVAEYYQKLA
YEELRRKDVNVGKHLAYVHGESFRNYLNDMKIVQQYAVYNRKAIIDEILTRMGLEEEDRF
TTIHNYIDLDGMILRKGAISAKKGERVLIPLNMRDGSLICTGKGNREWNYSAPHGAGRIM
SRRKAKETISLEDFKKTMEGIYTTTVNYDTLDECALAYKPMDEIIDNIRDTVEIVDIIRP
LYNFKTAE
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgattctggtaaaaggaaaatacaataccgccaaaatatttacatgcaatgtggaaagc
ggagcattggatcaaattaaggaattgtgtgatcaggaatttgtaaaggacagcataata
agaattatgcctgatgtgcatgagggcattggctgtaccattggtaccacgatgacaatt
accgataaaattgtgcccaatctggtgggtgtggacataggctgtggaatggaaacggta
aaacttaggcaaagaaacatcgattttaaaaagcttgacagaataatttatgattatata
ccttccggtttcgatatcaggaaaaaacctcataaatacgctgaatatattgatctgagc
agacttgcctgcaaaaatcatgtcaatcttgacagggcaagactgagtataggaacgctt
ggcggcggaaaccattttatagaagtcaacagggacagccatgacaatctgtacctggtt
gtccatacaggcagcaggcatcttggaaaacaggtggcggaatattatcagaaactggcg
tatgaggagcttagaaggaaagacgttaatgtaggcaagcacctggcttatgtccatggg
gagagtttccggaattacctcaatgacatgaaaatagttcagcaatatgccgtgtataac
cgcaaagccattattgatgagattttgacaagaatgggtctggaggaggaagacaggttt
actacaatccacaactatattgatctggatggcatgattctaagaaagggcgccatatcc
gccaaaaaaggcgaaagagtgttaataccccttaatatgagggacggaagcctgatctgc
acaggaaagggcaacagggaatggaattattcggcaccccatggcgcgggacggattatg
agcagaagaaaggcaaaggaaaccataagccttgaggattttaaaaaaaccatggagggc
atatataccaccaccgtcaattatgacactctggacgagtgcgctctggcgtataagcca
atggatgaaattattgacaatatccgggatacggttgaaatagtcgacatcatacgcccg
ctttataattttaaaaccgcggaataa
DBGET
integrated database retrieval system
