Corynebacterium singulare: CSING_04940
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Entry
CSING_04940 CDS
T03630
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csx
Corynebacterium singulare
Pathway
csx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSING_04940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csx03400
]
CSING_04940 (mfd)
Enzymes [BR:
csx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSING_04940 (mfd)
DNA repair and recombination proteins [BR:
csx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSING_04940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AJI78528
UniProt:
A0A0B6EUN0
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All DBs
Position
1020823..1024473
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AA seq
1216 aa
AA seq
DB search
MTTPMLGGLLKVAASDPKLKGLAAQVGTSSLHITGIDQARPWAIGTLAHHAPVLVVAASG
REAEDLTAELTALLGDKVTYFPAWETLPHERLSPAADIVGKRAQVLDLVGAGKAKVVVTS
ARGYCQPILSKVEGRAPIFLKEEEEHEFSHIVSELEFRAYKHVDMVAKRGEYATRGGILD
IFPTTSDYPVRVEFWGDEITDIRQFSVADQRAFTEIEVGEVAIYPARELPITNEVAARAR
DLAQKFGGNAALAELLTKVGEHIPAEGMEALLAVLADVPFVTLPELLPSGTHVLLVAPEK
IRTRVADLESTDAEFLAAGWEAAAMGADGPLAAEGLDTEASSYRSYESLVATCAQIEAPL
WTFAPPGMFAAAESETLPLDFEPGPTPRGDIQEIDAMMAQLLAHTTAGGRAAFIAPAQGA
IKRMVERFAEKGIPTKVATPGWEPSPGEVTLYQALSHAGLVFPKVRKLKDAEALPLVVVT
ETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKQGDYVVHETHGIGKFLKMAERTIQSGDE
TSRREYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGEAPTLSKMGGSDWKNTKKKAR
AAVREIAGELVELYAKRQAAPGHQFGPDTPWQAEMEDNFPFVETEDQMLAIDSVKQDMES
TVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHTDTFRERMQGFPV
DIEVLSRFTSTKESKEILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEH
KEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQI
AAAIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQMNEDVLEQTVQGFW
DREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPK
GATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRL
VGEAVETFKALARGEAPVVTDEGPKEIRIDLPVDAHIPESYINSERLRLEVYRKLAASKD
NADLQHTVEEMEDRYGPVPEPVQRLLAVARLRHQARRAGVADITVQGTRIKVHPVELADS
KQVRLKRLFPGSNYRAAAKAIQLNFPKAGRNVTDPKLRDVELVQWMADFLTAMFELDHVD
VTGGKATKNVISVGEK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaccactccgatgttgggcgggctgctcaaggtagcagcgtctgatcctaagcttaag
gggctcgccgcccaggtgggaacgtcatccctgcacattacgggcatcgaccaagcccgc
ccgtgggctatcggcaccttggcacaccatgcgcccgtcctggtcgtcgcagcatcgggc
cgcgaggcggaggatctgacagcggagctcactgcattgttgggggacaaggtgacgtat
ttcccggcgtgggagacgctcccgcatgaaaggctttcgcctgccgccgatatcgtcggc
aagcgcgcccaagtcctcgaccttgttggcgctggtaaagccaaggttgtggtgacctcc
gctcgtggttactgccagcccatcttgagcaaggtggaggggcgtgcgcccattttcctc
aaagaagaggaggagcacgagttttcccatatcgtgtcggagctggagttccgggcgtac
aagcacgtggacatggtggctaagcgcggtgagtacgctacccgtggcggcatccttgat
attttccccactacctccgattacccggtgcgcgtggagttctggggagacgagattacg
gatattcgccagttctccgtggcggaccagcgtgccttcacggagattgaggtaggtgag
gtcgccatttacccggcccgtgagctgcccatcaccaacgaggtggctgcgcgtgcccgt
gacttggcccagaagtttggtggcaacgcggcactggctgagcttcttaccaaggtgggt
gagcacataccggccgaaggtatggaggcgttgctcgccgtgcttgccgacgtccccttc
gtcaccctccccgaactcctccccagcggcacacacgtgctgctcgtggcaccggagaag
atccgcacccgcgtcgcagatctggaatccactgatgctgaatttctcgccgcagggtgg
gaagccgcagccatgggtgcggatggcccgcttgcagccgaaggtcttgacacggaagcc
tctagctaccgttcctacgagtccttggtggccacgtgtgcgcagattgaagcaccgctg
tggacctttgcacctcccggcatgtttgcggcggcggagtcggagaccctgccgctcgac
tttgaacctggccccacaccacgcggtgatatccaggaaattgacgccatgatggcgcag
cttctcgctcacaccactgcgggcgggcgtgctgcgttcattgctcctgcgcagggcgct
atcaagcgtatggtggagcgtttcgccgaaaagggaattcccaccaaggtggccacgcca
ggctgggagccgagtcccggcgaggtcaccctgtatcaagctctgagccatgccggtctc
gttttccccaaggtgcgcaagctaaaggacgcagaagcgctcccgctcgttgtcgttacg
gagactgatctcacgggtaatcgcgtgggcgatattgcgggagcgaaacgtcgcccagca
aagcgtcgcaaccgagtcgatccactggctctcaaacagggcgactatgtggtgcacgaa
acccatggtattggcaagttcctcaagatggctgagcgcaccattcagtctggtgatgag
acctcgcgccgtgagtacatcgtgcttgagtacgccgcttcgaagcgcggccagcccgct
gaccagctgtgggtccccatggactcgctcgacctgctgagtaagtacaccggtggtgag
gcccccaccttgtcgaagatgggcggctccgactggaaaaacacgaagaagaaggcgcgc
gccgctgtgcgcgaaatcgcaggcgagctcgtggaactctacgccaagcggcaagccgca
ccgggtcaccaattcggtccggatacgccgtggcaggcggagatggaggacaatttcccc
tttgttgagaccgaggaccagatgttggccatcgactccgtgaaacaagacatggagtcc
acagtgccgatggatcgcgtcgttgtgggtgacgtgggctatggcaagaccgaggtggct
gtgcgcgcggccttcaaggccgtccaggatggcaagcaagttgcggttctggttcctacc
acgctgctggctcaacagcacaccgataccttccgcgaacgcatgcagggcttcccggtt
gatattgaggtgctgtcgcgtttcacctcgaccaaggaatccaaggagattcttgctggc
ttggcggatggctcggtggacattgtcatcggtacccaccgcctgttgcagaccggcgtg
cagtggaagaatctaggccttatcgtcgtcgatgaggagcagcgcttcggtgtcgagcac
aaggaacacatcaaggcgctcaaggcctcggtggatgtgctgaccatgtccgcaaccccg
attccccgaaccctggagatgtccatggcgggcatccgtgagatgtccacaatccttaca
ccgccggaggaccgccacccagtgctgacctatgttggtgcctacgaggacaagcagatc
gcggcggccatccgccgcgagctgttgcgggatggacaggtgttctttatccacaacaag
gtcgcggacatcgaaaagaaggctcgtgagctgcgagatctcgtgcctgaagcgcgcatt
gtggtggcccacggccagatgaatgaggacgtcctggaacagaccgttcagggcttctgg
gatcgtgagtatgacgttctggtgtgtaccaccattgtggaaaccggcctggatatcgcc
aatgccaacaccctcatcgtggaaaatgcccaccacatgggcctgtcccagctccaccag
ctgcgcgggcgtgtgggccgctcccgtgagcgtggttatgcctatttcctttatccgaag
ggcgccacgctcactgagacttcctatgaccgccttgctaccattgcccagaacaatgac
ctcggcgccggcatggctgtggccatgaaggacctggaaatgcgcggtgccggcaacgtc
ctcggtgcggagcaatccggacatattgccggcgtgggttttgatctgtacgtccgcctc
gtcggcgaagccgtagaaaccttcaaagcgcttgctaggggagaagccccagttgtcaca
gatgaggggccgaaggaaatccgcatcgacttgcctgttgatgctcacattccggaaagc
tacatcaactctgagcgtcttcgcttggaggtctaccggaagctcgcggcctccaaggac
aacgcggacctgcaacacaccgtggaggagatggaggaccgctatggacccgtgccggag
ccggtgcagcggctgctggccgtcgcccgcctgcgccaccaagcgcgccgggcgggggtt
gccgatatcacagtgcaaggaacccgcatcaaggtccatccggtggagctcgcggattcc
aagcaggtgcgcctcaaacgcctcttccctggctccaactaccgtgcagctgccaaggcc
attcagctcaacttcccgaaagccggccgcaatgtgacggaccccaagctgcgcgatgtc
gaactagtacagtggatggcggacttcttaacggccatgtttgagctggaccacgtcgat
gtcaccggtgggaaggccacaaagaacgtcatcagcgtaggggaaaagtaa
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