KEGG   Comamonas thiooxydans: CtCNB1_2220
Entry
CtCNB1_2220       CDS       T01109                                 
Name
(GenBank) DeaD_2
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
ctt  Comamonas thiooxydans
Pathway
ctt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ctt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CtCNB1_2220
  09124 Replication and repair
   03420 Nucleotide excision repair
    CtCNB1_2220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ctt03021]
    CtCNB1_2220
   03400 DNA repair and recombination proteins [BR:ctt03400]
    CtCNB1_2220
Enzymes [BR:ctt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CtCNB1_2220
Transcription machinery [BR:ctt03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CtCNB1_2220
DNA repair and recombination proteins [BR:ctt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CtCNB1_2220
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD Mod_r
Other DBs
NCBI-ProteinID: ACY32966
LinkDB
Position
2534418..2536847
AA seq 809 aa
MAVRALCEFTARGGDLDLRFTPAPSALEGMEGHVVVQKRREKVGGYETELALRGRFQELQ
VRGRADGFDAVKQQLEEIKTYRGQLDGVRPHHRALHWAQARVYGHLLCQERGLERIKLAL
VYFQIGSAEETVLVEEYSATELQAFFESQCAHYLVWARSEAAHRQARDAAMAQLQFPMPA
FRAGQRELAVAVYRTAHASEGGRCLMVQAPTGIGKTLATIFPLLKSMGAAMGKGATDSAG
LDKLFFLTAKGTGHGLALHALWQLQQALSASASASASASASASASASASASVAPLRVLDM
QARDKTCEHPDKACHGESCPLARGFFDRLPAARQQALQLPLWDAPALRTLALEHGICPYY
LSQELVRWADVVVADYHYYYDSAAMLYALALQQDWRVGVLVDEAHNLLERARSMYTAPLS
QFALAQARQAATGAVKKALDALQRQWQTLNKAQDQASYQSYEGIPDTLLGTVQRAVGAIA
DQLAEQEIAGHATAGGPPALADHALLDFYWELLHFQALADQFGPHALFDIQLATPQQQRA
SRVRTPASTLCIRNVVPGPHLAPRHEAAQATVLFSGTLSPPGFYRDLLGLPADTAWLDVP
SPFAARQLQVHIAGHISTRWRDREASLIPMAELIAQQYARQPGNYLCFLSSFDYLQQLAA
TLERLQPQLPLWLQQRGMDEAGRAEFLARFVEGGQGLGLAVLGGAFSEGVDLPGSRLIGA
FVATLGLPQFNPVNEAMQRAMDQAMGVGLGYDYTYLYPGLRKVVQAAGRVIRGENDRGIL
VLMDDRFARAEVRALLPAWWQIEGVDRGF
NT seq 2430 nt   +upstreamnt  +downstreamnt
gtggcagtacgcgcgctgtgcgagttcacggcgcgcggcggcgatctggatctgcgcttc
acgcccgcgcccagtgcgctggagggcatggaagggcatgtcgtggtgcagaaacggcgt
gaaaaagtgggcggctacgagacggagctggcgctccgcggccggttccaagagctgcag
gttcgcggccgagccgatggctttgatgccgtcaagcagcaactcgaagagatcaagacc
taccggggccagcttgacggcgtacgcccccatcatcgggccttgcattgggcccaggca
agggtctacggtcatttgctgtgtcaggagcgcggtcttgagcggatcaagctggcgctg
gtctatttccagatcggcagcgcagaggagaccgtgctggtggaggaatattctgccacc
gaactgcaagcctttttcgaatcgcaatgtgcccactatctcgtctgggcacgcagcgag
gccgcccaccgtcaggcgcgcgatgcggccatggcgcagctgcagtttcccatgcctgcc
ttcagagccgggcagcgggagctggccgtggccgtctaccgcacggcccatgccagcgaa
ggaggtcgttgtctgatggtccaggccccgaccggtatcggcaagactttggccacgatt
ttccccctgctcaagagcatgggagccgccatgggcaagggggccacggattcagcaggg
ctggacaagctgttctttctcacagccaaggggactggacatgggctggcactgcacgca
ctgtggcagctgcagcaagctttgtcggcatcggcatcggcatcggcatcggcatcggca
tcggcatcggcatcggcatcggcatcggcatcggttgcgccactgcgtgtcctggatatg
caggcgcgcgacaagacctgcgagcatccagacaaggcctgccatggagagtcctgtccg
ttggcgcgcggtttctttgaccgactgcctgcggccaggcagcaggcgctgcaactgccg
ctatgggatgcgccagcgttacggactctggccctggaacatggcatctgcccctattac
ctgtcgcaggagttggtgcgctgggccgatgtcgtggtggccgactaccactattactac
gacagtgccgccatgctctatgcgctggccttgcaacaggactggcgtgtgggcgttctg
gtggacgaggcgcacaatctgctggagcgcgcgcgcagcatgtacacggcaccgctgtcc
cagtttgctctggcgcaggcccgtcaggccgcgaccggagctgtcaaaaaggcactcgat
gcactgcagcgccagtggcagacgctgaacaaggcccaggatcaggccagttaccaaagc
tacgagggcattcctgacacactgctgggcaccgtgcagcgggccgtgggtgcaatagcg
gatcaactggccgagcaggaaatagccgggcatgcgaccgcaggggggccgcccgcgctt
gccgaccatgccttgctggatttttactgggaactgctgcactttcaggcgctggccgat
cagttcgggccgcatgcgctgtttgatattcaactggccacgccgcagcagcagcgtgcg
agcagagtgcgtacgccggcatccacgctgtgcattcgcaatgtggtgcccgggccgcat
ctggcgccacgccatgaggcggcacaggccacggtgctgttttcgggcacgctgagtccg
cccgggttctaccgtgacctgctgggactgcctgccgatactgcctggctggatgtcccg
tcgccgtttgcggcccggcagctgcaggtgcatatcgcaggccatatatcgacacgctgg
cgagatcgcgaggcatcgctgatccccatggccgagttgatcgcgcagcaatatgcgcgt
cagcccggcaactatctgtgttttctcagcagctttgattatctgcagcaattggccgcc
accctggagcggctgcagccgcaactgccgctgtggctgcagcagcgtggcatggacgag
gccgggcgtgccgaatttctggcccgctttgtcgagggcggtcagggcctgggcctggcc
gtgctgggcggggcgttctccgaaggcgtggatctgcccggcagccgtctgatcggtgct
tttgttgccacgctgggtctgccccagttcaatcctgtcaacgaagccatgcagcgtgcc
atggatcaggccatgggagtggggctgggctatgactacacctatctttacccgggcttg
cgcaaggtggtgcaggcggctggccgggtcatacgtggcgagaatgatcgtggcattctg
gtgctgatggacgaccgcttcgcgcgcgccgaggtgcgtgcactgttgcctgcctggtgg
cagatcgaaggggtcgaccgaggtttctga

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