Cyanothece sp. PCC 7425: Cyan7425_0486
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Entry
Cyan7425_0486 CDS
T00836
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyn
Cyanothece sp. PCC 7425
Pathway
cyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cyan7425_0486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyn03021
]
Cyan7425_0486
03400 DNA repair and recombination proteins [BR:
cyn03400
]
Cyan7425_0486
Enzymes [BR:
cyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cyan7425_0486
Transcription machinery [BR:
cyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cyan7425_0486
DNA repair and recombination proteins [BR:
cyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cyan7425_0486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
Apocytochr_F_C
MethyTransf_Reg
Motif
Other DBs
NCBI-ProteinID:
ACL42878
UniProt:
B8HTV8
LinkDB
All DBs
Position
complement(282544..286551)
Genome browser
AA seq
1335 aa
AA seq
DB search
MAGQTSPSQREGVNTVFFNRIINKGGLKNLIAWAFGNYGTARTAEMADRLKDLGFRYATR
AGVSISVDDLLVPPKKQELLKAAEDEIRVAEARYTRGEITEVERFQKVIDTWNSTNEELK
EQVIKYFRAKDVLNSVYMMAFSGARGNISQVRQLVGMRGLMANPQGEIIALPIKTNFREG
LTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVRELDCGTRQGISLRSMT
DGDRVLIPLKDRLFGRVMLQDVVHPKTGEVIAAANQAVSAELASQIAKAGVEEVTVRSPL
TCAARSVCQYCYGWSLAHAKMVDTGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTAELAG
QIRAPFAGQIKFPKGLRSRPFRTRHGEDALVVETNCRISLSNDERTQEFDVSQGSTLLVR
DGQSVQPAQLIAEVAATGRNVRKSTEKATKDVASDLAGAVQFADLISEEKRDRQGNTTRI
APRGGLIWILSGEVYNLPPGAEPVVNNGDRIEAEDVLAETRLVTEHGGIVRLPEQTEAKG
GREVEIITASVLLDTAAVIAESQQGREHYTIETQQNQRFSLKAAPGTKVQNNQVVAELID
DNYRTQTGGILKYSGVEVGKRGKAKQGYEVVRGGTLLWIPEEAHEVNKDISLLQIEDGQY
VEAGTEVVKDIFCQSSGVVEVTQKNDILREIVIKPGELHLVDDPEAVIAKDGTFAYPGQE
VLPGLMMADLRYLEYVETPEGHALLLRPVQEFPVPDEPSVPSQESVQESGRSIRLRAVQR
LPYKDGERVKSVDGLDLLRTQLVLEIGTEAPQLAADIEIIPDENNPEVQRLQLVILESLV
IRRDIAADQTQGSTNTRLLVKDGDQIAPGADVARTEIRAKQGGEVQGIRRGGEAVRRVLL
ITESDLVRLSTGAQTPTVKVGDLLRAGDPIAPGVTATETGQVMQVNDNEITLRIARPYLV
SPGAVLQINDGDLVQRGDSLALLVFERAKTGDIIQGLPRIEELLEARRPKEMCVLAQRPG
TTQVIYNDDDSVEIKVIEADGTIEDYPIGPGQGPIVGDGQSVGAGEPLTDGPINPHDLLE
IFYKLNEPLGQHRAALISLQKVQSFLVNEVQSVYQSQGIEIADKHIEVVVRQMTSKVRID
DGGDTTMLPGELVDLYQVEQVNEAMSITGGAPAAFTPVLLGITKASLNTDSFISAASFQE
TTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNTYEELASGELDSSYDTAGLEDLV
DVIDDRTARSYTLESLEEDDTVGEGFLGSVSTPKERRRDRFSFGANLDDDDVLIDDEIAD
DLDEDDDEDDEDDED
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggcaggacaaacatccccttcccagcgtgaaggtgtcaacacggtcttttttaaccgc
attatcaacaagggaggcttaaagaacctgattgcctgggcctttggcaactatggcact
gccagaaccgctgaaatggctgacagactgaaggatctgggttttcgctatgccacccga
gcaggggtttccatcagtgtagatgacctgctcgtcccccctaagaagcaggaactattg
aaagcggcggaagatgaaattcgcgtcgccgaagcccgttatacccgtggtgaaatcacc
gaagtagaacggttccagaaagtgattgacacctggaacagtactaatgaggaactgaaa
gagcaggtgattaagtacttccgggccaaggatgtgctcaattccgtctacatgatggcg
ttctcgggagcgcggggtaatatttcccaggtgcgtcagctcgtcggcatgcggggactg
atggccaaccctcagggagaaattattgctctaccgattaaaactaacttccgcgaagga
ctgacggtaacggagtatattatttcttcctacggagcccggaaaggcttggtggatacc
gctctacggacagcggactctggctatctcacccggcggctggtagacgtttcccaggat
gtgattgtgcgggaactggattgtgggacccgtcagggcatttccttgcgcagtatgacc
gatggcgatcgggtgttgattccgctgaaggatcggttgttcggccgggttatgctccag
gatgtggtgcatcccaaaacgggcgaggtgattgcggcagccaatcaagcggtgtccgca
gaactggccagccagattgccaaagccggagtggaagaagtgacggtacgctctcccctc
acctgtgccgctcgctcggtctgccagtattgctatggctggagtttagcccacgccaag
atggtagacaccggggaagcggtggggattattgccgcccagtcgatcggtgaaccgggc
acccagttgaccatgcggaccttccacacaggaggggtgtttactgccgagttggcgggc
caaattcgcgccccctttgccggtcagattaagtttcccaaaggattacgtagtcgcccc
ttccgcacccgtcacggtgaagatgctttagtggtggaaaccaactgccgcatcagcctg
agcaacgatgagcgcacccaggaatttgatgtcagccagggatcgacgctgctggtccgg
gatggtcagtccgtccaaccggctcagctgattgctgaagtagcagcgaccgggcgaaac
gtccgcaaatcgacggaaaaggccaccaaagacgtggcttccgatctggcgggagcagtc
cagtttgctgatctgatttcagaagaaaaacgcgatcgccagggcaataccactcgcatt
gctccccggggcggtctaatctggattctgtctggtgaggtttacaatctgccccctggt
gccgaacctgtagtcaataatggcgatcggatcgaggcggaggatgtgctggcggaaacc
cgactggtgactgaacacggtgggatcgtacggctaccggaacagactgaagctaaaggc
ggacgggaagtcgaaattattactgcttccgtactgctggatacagcggcggtgattgcg
gaaagtcaacagggacgggagcattacacgatcgaaacccagcagaatcagcggttttcg
ctcaaagcggcccctggcacaaaagtccagaacaaccaggtggtggccgaactgatcgac
gacaactaccgcacccaaaccggcggaattctcaaatattctggcgtggaagttggtaag
cggggcaaagccaaacagggctacgaagtggtacggggtggcacgctgctctggattccg
gaagaagcccacgaagtcaataaagacatttccctgctgcagattgaagacggtcagtac
gtagaagcgggaacagaagtggtgaaggatatcttctgccagagcagtggcgtggtggaa
gtcacccagaaaaatgacattctgcgggaaattgtgatcaagcctggggaactccacctg
gtggatgatcccgaagccgtcattgccaaggatggcacctttgcctaccccggtcaggaa
gtcctccccggtctgatgatggcagacttgcgttacctggagtacgtggaaaccccggaa
ggccatgccctgttgcttcgtcctgtccaggaatttcctgtccccgatgaaccctctgtt
cccagccaggaatcggtgcaggaatcgggccgttctatccggttacgggcagtgcaacgc
ttaccctacaaagatggggaacgggtgaagtccgtcgatggcttagatctgttgcggacc
caactcgtgctcgaaattggtacggaagccccccaactggcagcggacatcgaaattatc
cccgacgagaacaatcctgaggtgcagcggttacaactggtgatcctggaatctctggtg
attcggcgagatattgctgcggatcagacccagggcagtaccaatacccgcttgctggtc
aaggatggggatcagattgcccccggtgctgacgtggcccgtacagaaattcgcgccaag
cagggaggagaagtacagggcattcgtcggggtggagaagccgtgcgacgggtgctgttg
atcacggagtccgatctggtgcggctctcaactggggctcagacaccaaccgtcaaagtg
ggggatctgctgcgggctggcgatccgatcgcccctggggtaaccgccaccgaaacaggg
caggtgatgcaggtgaatgacaacgagatcaccctgcggattgcccgaccctatctggtt
tctcccggtgcagtgttgcagattaatgacggtgacctggtacaacggggggatagctta
gcgctgctggtgtttgagcgagctaaaaccggagacatcattcagggtctaccccggatt
gaagagttgctggaagcccgccgccccaaagaaatgtgtgtgctggctcagcgtcccggt
accacccaggtgatctacaacgatgatgacagcgttgagatcaaagtgattgaagcggat
gggacgattgaagattatccgatcggtcctggtcagggtccgatagtgggtgatggtcag
agtgttggcgcaggtgaacccctcaccgatggtccgatcaatcctcacgatttgctggaa
atcttctataagctgaacgaacctctcggtcaacatcgagctgccttgatcagtttgcag
aaagttcagtcctttctggtgaacgaagtgcaatcggtgtaccagtcccaggggattgag
attgccgacaagcacattgaggtagtggtgcggcagatgacctctaaagtcagaattgac
gacgggggcgatacaaccatgctgcccggtgaactggtggatctctaccaggtggagcag
gtgaatgaagccatgtcgatcaccggaggggcaccggccgcctttacgcctgtgttgctg
gggattaccaaagcctccctcaataccgatagcttcatttctgctgccagcttccaggaa
accactcgggtgctgaccgaagcggcgatcgaaggtaagtcggactggctacggggctta
aaagaaaacgtgatcatcgggcgcttgatcccggcaggtacgggcttcaacacctatgag
gaactggccagtggtgagctggatagcagctacgataccgctggattggaagatctggtg
gacgtgatcgacgatcgcaccgcccgcagctacacgctggaaagcctggaggaagatgat
accgtgggcgaaggtttcctggggtctgtctccacacctaaggaacgccgccgcgatcgg
ttcagctttggggccaatctggatgatgacgatgtcctgatcgatgacgaaatcgccgat
gacctggatgaggacgacgatgaagatgatgaggatgatgaggattaa
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