Candidatus Atelocyanobacterium thalassa: UCYN_08620
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Entry
UCYN_08620 CDS
T01159
Name
(GenBank) DNA-directed RNA polymerase gamma chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UCYN_08620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyu03021
]
UCYN_08620
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_08620
Enzymes [BR:
cyu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UCYN_08620
Transcription machinery [BR:
cyu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UCYN_08620
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UCYN_08620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
DUF2164
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
ADB95546
UniProt:
D3EPZ6
LinkDB
All DBs
Position
complement(981188..983077)
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AA seq
629 aa
AA seq
DB search
MKPEQDTRFDYVKIGLASPERIRQWGERTLPNGTTVGEVTKPETINYRTLKPEMDGLFCE
RIFGPSKDWECWCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVTHVWYLKG
IPSYMSILLDMALKDVEQIVYFNAYVVLDPGNASNLQYKQLLTEEQWIEIEDQIYAEDSD
LYGIEVGIGAEAIHRLLQEMDLEEIAEKLREEITQSKGQKRAKLIKRLRVIDNFIATGSL
AEWMVLEVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIYQCGLPREMAIELFQPFVIHRLIRLGLVNNIKAAKKLIIKGDSSIWNVLK
EVIAGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLACHNILSPATGAPIVAPSQDMVLGCYYLTAENPDAQKGGGRYFANFED
AIKAYEQGNIDLHAYIWLRCEDPYEEVITDKPDKEVIKTETSEDGSIIKYYRERKVRELN
GEILSQFIRTTAGRIIYNKTIQDALAFLD
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagaacaagatacaagatttgactatgtcaaaattggattagcttctccagaa
cgtatccgtcagtggggggaaagaactcttcctaatggtactactgttggagaggtgacg
aagcctgaaaccatcaattacagaactttgaagccagagatggacggactattttgtgaa
cgaatttttggtccttcaaaagactgggaatgttggtgtggcaagtataagagagttcgt
caccgtggtattgtttgtgaacgttgtggagttgaagttacagaatctcgtgttcgtaga
catcgcatgggttttataaagttagcggctcctgttacacatgtatggtatttgaaagga
attcctagctatatgagtatcttacttgatatggctttaaaagacgtagaacaaattgtt
tactttaatgcttacgtagttttagacccaggcaatgctagcaatcttcaatataaacaa
ctattaactgaagagcaatggattgaaattgaagatcaaatttatgctgaagactcagat
ctatatggaatagaagttggtattggagcggaagcgattcatagattacttcaagaaatg
gatctagaagaaatagcagaaaagttacgagaagaaattactcaaagtaaagggcaaaag
agagcaaaactaattaagcgtctacgagtaatagataacttcattgctactggatcactc
gccgaatggatggttttagaagtaattcctgtaattcctcctgatcttcgacccatggtt
cagttagatgggggacgctttgcaacatctgatctaaatgatttatatcgaagagttatc
aatcgtaataaccgtttggctcgacttcaagaaattcttgctccagaaattattgttcgg
aatgaaaagcgtatgctgcaagaagcagttgatgctctgattgataacgggagaagaggt
cgtacagtggtaggagcgaataatagacctctcaaatcattatctgatattattgaaggt
aagcaaggtcgttttcgtcaaaatcttttaggaaaaagggttgattactctggtcgttct
gtaattgtagtaggtccaaaattaaaaatttaccaatgcggattacctcgtgaaatggct
atcgaattatttcaaccttttgtaattcatcgtctaatacgtttaggcttagtaaataat
attaaagctgctaaaaagcttatcattaagggtgattctagtatctggaatgttctaaaa
gaagtaattgcgggacatcctgttttacttaaccgtgctcctactttgcatcgcttggga
attcaagcatttgaaccaattttagttgaaggaagagctattcagttacatcctttggtt
tgtccagcatttaatgctgattttgatggtgatcaaatggcagttcatgttcctttatcg
ttagaatctcaagcagaagcaagattactaatgctagcttgtcataacattctatcacca
gctacaggagcccccattgttgctccttcgcaagatatggttcttggatgttattatctt
acagcagaaaatcctgacgcccaaaaagggggaggaagatatttcgctaattttgaagat
gctattaaagcttatgagcaaggtaatattgatttacatgcttatatttggcttcgatgt
gaagatccctatgaagaggttattacagacaaaccagataaagaagtaataaaaacagaa
acttctgaagatggtagtataataaaatattacagagaacgtaaggtcagagaactaaac
ggagaaattctttctcaatttattcgcactacagcaggacgaataatttataacaaaaca
attcaggacgctttagcttttttagactaa
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