Delftia acidovorans: Daci_2848
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Entry
Daci_2848 CDS
T00620
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dac
Delftia acidovorans
Pathway
dac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Daci_2848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dac03400
]
Daci_2848
Enzymes [BR:
dac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Daci_2848
DNA repair and recombination proteins [BR:
dac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Daci_2848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
IstB_IS21
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABX35486
UniProt:
A9BVX3
LinkDB
All DBs
Position
complement(3120976..3124470)
Genome browser
AA seq
1164 aa
AA seq
DB search
MELPKLTPGKRFTLPRPVGSADALLLARLGEREKAAGRVTAIVTADASDAQRLIDEMAFF
APGLRCALFPDWETLPYDSFSPHQDLISERLATLWRINQRDKEHGADVVLVPATTALYRL
APPSFLAGYTFEFKSGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSL
QPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARAKFRHRWRELLEG
DPTRSRIYKDMGQGIATAGIEYYLPLFFDETATVFDYLGADATVVMHGDLEPAFQRFWQD
TKERFRLVQGDPERPALAPEVLFLSADQFYTRAKEHAQLALRPGTEDVADSAIFQKLEDL
SVVRGAEDPLARLQRHIATSAHRILLLAESDGRRESLLDFFRASGVNPPVFDSLAEFQGD
AGEKVGIATAGLMNGFAWVEEGLDFVTETELFATSPTGRRRRRQEQVSDVEALIKDLSEL
KVGDPVVHSDHGIGRYQGLVNMDMGQKNPDGTPAVQEFLHLEYAGNAVLYVPVSQLQLIS
RYTGVSPEDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRYSPQDY
EQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAITGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADGSVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRKQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSSNTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEVGFQLYNEMLSEAVRSLKAGKEPDLLSPLSASTDINLHAPA
LLPNDYCGDVHLRLSFYKKLATARTSDQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVVKVDAAPGVINITFKPQPPVDPMAIIHLIQKNKHIKLAGNEKLRIERALDNPKDR
AQMVRDVLRSLGQPLVEAKAAQPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcccaagctcactcccggaaaacgcttcaccctgccccgccccgtgggcagc
gccgatgccctgctgctggcccgcctgggcgagcgcgagaaggctgcaggcagggtgacg
gccatcgtcacggccgacgcctcggatgcccagcggctgatcgacgagatggccttcttc
gccccgggcctgcgctgcgcgctgttccccgactgggagaccctgccctacgacagcttc
tctccccaccaggacctgatcagcgagcgcctggccacgctgtggcgcatcaaccagcgc
gacaaggagcatggcgccgacgtggtgctggtgcccgccaccacggcgctgtaccggctg
gcgccgccctccttcctggccggctacaccttcgagttcaagagcggccagaagctggac
gaagccaaactcaaggcccagctgacgctggccggctaccagcatgtctcccaggtggtc
agccacggcgagtacgcggtgcgcggcggcctgatcgacctgttcccgatgggctcgctg
cagccctaccgcgtggatctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacccagcgcagcctctaccccgtgcccgaggtgcgcctgctgcccggccgcgagttc
cccatggacgaggacgcgcgcgccaagttccgccaccgctggcgcgagctgctggagggc
gatcccacgcgcagccgcatctacaaggacatgggccaaggcattgccacggccggcatc
gagtactacctgccgctgttcttcgacgaaacggccaccgtgttcgactacctgggcgcc
gatgccaccgtggtgatgcatggcgacctggagccggccttccagcgcttttggcaggac
accaaggagcgcttccgcctggtgcagggcgaccccgagcgcccggccctggcgcccgag
gtgctgttcctgtccgccgatcagttctacacgcgcgccaaggagcacgcccagctcgcg
ctgcgcccaggcaccgaggacgtggcagacagcgccatcttccagaagctggaggacctg
tccgtggtgcgcggcgcggaagacccgctggcgcgcctgcaaaggcacattgccaccagc
gcccaccgcatcctgctgctggccgagtccgatggccggcgcgaaagcctgctggacttc
ttccgcgcctcgggcgtgaacccgccagtcttcgactcgctggccgagttccagggcgat
gcgggcgagaaggtgggcattgccacggccggcctgatgaacggcttcgcctgggtggag
gaaggcctggacttcgtcaccgagacggagctgttcgccaccagccccacgggccgcagg
cgccgccgccaggagcaggtcagcgatgtggaggcgctgatcaaggacctgtccgaactc
aaggtgggcgaccccgtggtgcattcggaccacggcatcggccgctaccagggcctggtc
aacatggacatgggccagaagaaccctgacggcacgccggccgtgcaggagttcctgcac
ctggagtacgcgggcaacgccgtgctctacgtgcccgtcagccagttgcagctgatcagc
cgctacacgggcgtctcgcccgaggacgctccgctgcacaagctcggcggcacgcagtgg
gaaaaagccaagcgcaaggcggccgagcaggtgcgcgactcggcagccgagctgctgaac
atctatgcgcgccgcgccgcacgccagggccatgccttccgctactcgccccaggactac
gagcagttcgccaacgacttcggcttcgaggaaacggcggaccagcgcgctgccatccac
gccgtgatccaggacatgatcagcccccagcccatggaccgcctggtctgcggcgacgtg
ggcttcggcaagaccgaggtggcgctgcgcgcggccttcgtggccatcacgggcggcaag
caggtagcctttctcgcgcccaccacgctgctggccgagcagcattaccagaccctggtg
gaccgcttctccaagtggccgatcaaggtggccgaagtctcgcgctttcgctcgggcaag
gagatcacggcggccgtcaagggcattgccgacggctcggtggacatcgtcgtgggcacg
cacaagctgctgtcggagtccacgcagttcaagaacctgggcctgctgatcatcgacgag
gagcaccgcttcggcgtgcgccacaaggaagccatgaaggccatgcgcgccgaggtggac
gtgctcacgctgacggccacgcccatcccgcgcaccatgggcatggcgctggaaggcctg
cgcgacctgtccgtcatcgccaccgcgccccagcggcgcctggccatcaagacctttgtg
cgcaacgagggcacgggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagaccatcgagaaccgcaagcaaaagctcgag
gaaatcctgcccgaggcacgcattgccgtggcccacggccagatgcccgagcgcgagctc
gaacgcgtgatgcgcgacttcgtggcccagcgctacaacatattgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccagctccaacaccatcctcatcagccgcgccgacaag
ttcggcctggcccagctgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgcccgacctggacagcctgaccaagcaggcccagcagcggctg
gaggccatccagcagatggaggaactgggttcgggcttctacctggccatgcacgacctg
gagatccgcggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggaggtg
ggcttccagctctacaacgagatgctgtcggaggccgtgcgcagcctcaaggccggcaag
gagcccgacctgctcagcccgctgtcggcctccaccgacatcaacctgcacgcgccggcc
ctgctgcccaacgactactgcggcgacgtgcacctgcgcctgtccttctacaagaaactg
gccacggcccgcaccagcgaccagatcgacaccctgctcgaagaaatcgtggaccgcttc
ggcaagctgccgccccaggcgcagacgctgatcgacgtgcaccgcctgcgcgtgctgtcc
cagccctacggcgtggtcaaggtggatgcagcgcccggcgtcatcaacatcaccttcaag
ccccagccgcccgtggacccgatggccatcatccacctcatccagaagaacaagcacatc
aagctggccggcaacgagaagctgcgcatcgagcgtgccctggacaaccccaaggaccgc
gcccagatggtgcgcgacgtgctgcgcagcctgggccagccgctggtggaggcgaaggca
gcccagcccgcatag
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