Desulfobacca acetoxidans: Desac_1893
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Entry
Desac_1893 CDS
T01454
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dao
Desulfobacca acetoxidans
Pathway
dao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desac_1893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dao03019
]
Desac_1893
Messenger RNA biogenesis [BR:
dao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desac_1893
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
EAD2
Motif
Other DBs
NCBI-ProteinID:
AEB09731
UniProt:
F2NJS6
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Position
complement(2120123..2121694)
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AA seq
523 aa
AA seq
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MGLPVESISFLAVGLSGGLGVLAGFYLRRMIIESRIDSVENLAKKILDEARKEAETIKKE
EALRAKDQLFQMKVEFDKESKERRSELNILEKRLLQKEEHLEKKISILDSKESEINNRQK
LIDATEKTLKEKEIQYQNLIQEQRHNLERLAGMSSEEGRNLLLKTLEREVRTDAARLVKR
IETDAREVADKKAKEIIGLAIKRYASEYVAEQTVSVVNLPNEEMKGRIIGREGRNIRALE
AATGVDVIIDDTPEAVILSAFNPIRREIARRSLEHLITDGRIHPARIEEVVEKIGQEVEA
NIREAGEEAAFDAGVHGLHPELIKLLGKLRYRTSFAQNVLQHSIEVSYLCGIMAAELGLN
AKHAKRAGLLHDIGKAVDHEVEGPHAMIGAELAKRFGESVKVIHAIQAHHEDVPPESVLA
VLVQAADTLSGARPGARREMLETYVRRLEELERIARNFNGVNKTYAIQAGREIRLIVDSD
KVSDEEAFLLCREAAKKIETELTYPGQVKVTVIRETRAVEYAR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgggattgccggtggaatctatttctttcctggcagtgggattgagcggcggtttaggg
gttctcgccggattttacctgaggcgcatgatcatcgaatcaaggatcgattcggtggaa
aatttagccaaaaagatcctagacgaagccaggaaagaggctgaaaccataaagaaggaa
gaggccttgcgagccaaggaccagctcttccagatgaaagttgagtttgacaaggaaagc
aaggagcgccgttcggaattaaacattttggaaaagcgactgctacagaaagaggaacat
ttagaaaagaaaatcagcatcctggatagtaaggagtccgagatcaacaatcgccagaaa
ctcattgatgctacggaaaaaacacttaaagaaaaagaaatccaatatcaaaacctcatc
caggaacagaggcataatttggagcggttggccggaatgagttctgaagagggccgcaat
ctgttgctaaaaactttggagcgggaggtgcgaaccgatgctgctcggctggtgaaacgg
attgaaaccgatgctcgagaagtggcagacaagaaagccaaagagatcatcggtctggcc
ataaaacggtatgccagcgaatatgtggcggagcagaccgtatcggtagtcaatcttccc
aacgaagagatgaagggacggatcatcggccgtgagggacggaatatccgagctttggag
gcagccaccggcgtggacgttattatcgatgatacccccgaggcggtcattctttcggct
ttcaaccctatccggcgcgagattgcccgccgctccctggagcatctgattaccgatggc
cgcatccacccggcccgtattgaagaagtggtagagaagatcggccaggaagtcgaggcc
aacatcagggaagccggcgaagaagccgctttcgacgccggagtgcatggattgcacccg
gagctgatcaagctattgggcaaactccgctatcgcaccagctttgcccagaatgtattg
cagcattccattgaggtgagctatctctgcggcattatggcggcggaacttggtttgaac
gccaaacatgccaaacgggccggactgctgcatgacatcggcaaggcggttgaccatgaa
gttgagggccctcacgccatgatcggcgcagagctggcaaaacgctttggggaatcggtc
aaggttattcatgccatccaagcgcatcatgaggatgtgcctcccgaatccgtgctggca
gttctggtgcaggcggcagataccctatccggcgcccgtcccggagcacgccgggagatg
ctggaaacctacgtccggcgtttggaagaactagagcggatcgcccgtaattttaacggg
gtcaataaaacctatgccatccaggccggccgggagatccgcctcatcgttgacagcgac
aaggtcagtgatgaagaggcctttctgttgtgtcgggaggcggccaaaaagatcgaaaca
gaattgacctatccgggacaggttaaagttaccgtcatccgggagacccgggcagtggaa
tacgcccgctag
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