Candidatus Desulforudis audaxviator: Daud_0005
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Entry
Daud_0005 CDS
T00655
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dau
Candidatus Desulforudis audaxviator
Brite
KEGG Orthology (KO) [BR:
dau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dau03032
]
Daud_0005
03400 DNA repair and recombination proteins [BR:
dau03400
]
Daud_0005
Enzymes [BR:
dau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Daud_0005
DNA replication proteins [BR:
dau03032
]
Prokaryotic type
DNA Topoisomerases
Daud_0005
DNA repair and recombination proteins [BR:
dau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Daud_0005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
TOPRIM_C
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ACA58574
UniProt:
B1I1H8
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All DBs
Position
4195..6102
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AA seq
635 aa
AA seq
DB search
MDKNGSGYRAEDIQVLEGLEAVRKRPGMYIGSTGPKGLHHLIFEVVDNSIDEALAGFCDY
IEVVIHADNSVTVSDNGRGIPVDIHPQVGRPALEVVLTRLHAGGKFGGTQYKISGGLHGV
GVSVVNALSRRMEVEVKREGYRYRQEFERGLATGELELLDEADETGTRVTFIPDPDIFEE
VEFQYDVVAKRLRELSFLNAGVTLVLRDERTGRDKVYQYAGGIRDFVRHLNLHKEVLPAD
PIYVEDHKNGVWVEVAVQYVVNSDRELIFSYANTIHTVDGGTHEAGFKSALTRTINDYAR
KYNLVKNDSLSGEDIREGLTAVINVKVPEPQFEGQTKTKLGNSEVRGLVDWVVSQRLAAY
LEEHPTEARQIVQRAVVASRAREAARRARELTKRKSLLESATLPGKLADCSRRDPQHSEL
YLVEGDSAGGSAKQGRDREFQAILPLRGKILNAEKARRDKLLGNEEIRALITAIGTGFGE
DFDLAKARYHRIVIMTDADVDGSHIRTLLLTFFYRYMKPLIDAGYVYIAQPPLYRVSGKG
RKNGVYLYSDQQLEQFFRENGRQNWSIQRYKGLGEMNPEQLWDTTLDPENRTMLQVTLED
ALAAEQLLSTLMGEQVEPRREFIQQHAREVRNLDI
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttggacaaaaacggttcggggtaccgggccgaggatattcaggtcctggaaggcctggag
gcggttcgcaaacgtcccggcatgtatatcggctcgaccggtccgaaaggtttgcaccac
ctgattttcgaggtggtggacaacagcatcgacgaggccctggccggattctgcgattat
atcgaggtggttatccacgctgacaattcggtgaccgtttcggacaacggacgcgggatc
ccggtggatatccacccgcaggtgggccggccggccctggaagtggtcctgaccaggttg
cacgccggcgggaaattcggcgggacccaatacaagatttccggcggcctgcacggcgtc
ggcgtttccgtggtgaacgcgctctctaggcggatggaggtggaggtcaaacgggagggg
taccgctaccgccaggagttcgagcgcggtctagcgactggagaactggagcttttggac
gaggcggacgaaaccggcacgcgggtgacctttatccccgaccctgatatctttgaagaa
gtggaatttcagtacgacgtggtcgccaagagactccgcgagctttctttcctgaacgcc
ggcgtgaccctggtgctccgcgacgagcggaccggccgcgataaggtgtaccagtacgcg
ggaggcatccgggatttcgtgcgccacctgaacctgcacaaggaagttcttccggccgac
cccatctacgtagaggaccacaagaacggcgtttgggtggaagtggccgttcagtacgtt
gtaaactccgaccgggaactgatcttttcttacgccaacaccattcacacggtcgacggc
ggcacccacgaagcggggttcaagtcggcgctcacccgcacgatcaacgactacgctcga
aaatacaacctggtcaagaacgattcgttaagcggcgaggacatccgcgagggcctaacg
gctgtgatcaacgtcaaggtgcccgaaccccagttcgaggggcagaccaaaaccaagctc
gggaacagtgaggtgcgcggtctggtggactgggtggtgtcccaacgcttggccgcctac
ctggaagaacacccgacggaggccagacagatcgtacagcgggcggtggtcgcttcccgg
gcccgggaggcggcccggcgggcacgcgagttaaccaagcgcaagagccttctggagagt
gcgaccctccccggcaaactggccgactgttcccggcgtgatccccaacactccgagctg
tacctggtggagggggattcggccggcggttcggcgaaacagggccgggaccgggaattc
caggcgattctgccgctgcgcggcaagattttgaacgccgaaaaggcccgccgggataag
cttttgggcaatgaggaaatccgggcgctgatcacggcgatcggcacggggttcggcgag
gacttcgatctggcaaaagcccgctaccaccggatcgtgatcatgaccgacgccgacgtg
gacggctcacacatccgcaccctgctcctgacctttttctaccggtacatgaagcccctg
atcgatgccggttacgtgtacatcgcccaaccaccgctgtacagggtcagcggcaagggc
agaaaaaacggcgtgtacctgtacagtgaccagcagctggagcagttcttccgggaaaac
gggcggcagaactggagcatccagcgctacaagggccttggggagatgaacccggaacag
ctctgggataccaccctggacccggaaaaccggacgatgctccaggtgaccctggaggat
gccctggcggccgagcagcttctgtccaccctgatgggggaacaggtggagccgcgccgg
gagttcattcagcagcacgcccgggaggtcagaaaccttgacatctag
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