Desulfarculus baarsii: Deba_2693
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Entry
Deba_2693 CDS
T01284
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dbr
Desulfarculus baarsii
Pathway
dbr03030
DNA replication
dbr03410
Base excision repair
dbr03420
Nucleotide excision repair
dbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Deba_2693
03410 Base excision repair
Deba_2693
03420 Nucleotide excision repair
Deba_2693
03430 Mismatch repair
Deba_2693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dbr03032
]
Deba_2693
03400 DNA repair and recombination proteins [BR:
dbr03400
]
Deba_2693
Enzymes [BR:
dbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Deba_2693
DNA replication proteins [BR:
dbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Deba_2693
DNA repair and recombination proteins [BR:
dbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Deba_2693
NER (nucleotide excision repair)
GGR (global genome repair) factors
Deba_2693
MMR (mismatch excision repair)
DNA ligase
Deba_2693
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Deba_2693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
5_3_exonuc
PTCB-BRCT
DUF2116
TF_Zn_Ribbon
HVO_2753_ZBP
Auto_anti-p27
zf-NADH-PPase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ADK86047
UniProt:
E1QKF4
LinkDB
All DBs
Position
complement(2989995..2992070)
Genome browser
AA seq
691 aa
AA seq
DB search
MEKPSLSAAARRVAQLSEELRRWSRVYYNEGRQEVADALYDQRFAELEELERLFPMLRLA
DSPTRRVGAPPQSSFAAVSHFRPMLSLESRGDFGLVGDLLRRLADAGQPEAAILAQPKID
GLSIELVYENNLLRTASTRGDGVVGDDVTTNARVVGGIPHALEGLAPALVVVRGEVYMDR
AGFLDLNRQLVAQGQDGFANPRNAAAGSLRQQDPFVTAGRPLRFFVFELVNADDLGLASD
SDALRLLGQWGFPLTDDHLRLGRGAEFVRQAHADYLARRAELPFDIDGVALKVDDLALRG
VLGQRSRTPRWAVAWKFPPRQEVTPVLDVVVQVGRTGKLTPVALLEPVDIGGVTVARATL
HNFEEVARLDLRVGDLARMERAGDVIPRVAGVARQAPPERRGPAIVAPTHCPVCGATIVR
DEGGVNHRCPNSLGCPAQQKAALRHFASRAAMDVEGLGGKNVEALWERGFLSDLPSLYAL
AARRDELAGLRGWGELSADNLLRAIAATKGAALDRFIFALGIPGVGQETAKLLAQRLGSL
EALVAAADGWRKPAKDRPAGLYLDDIAGVGPKTAEDIQRFFQTPQTRQTALKLAELVGPT
WAESPTPRAGAPLAGKTIVFTGRLEGLSRPQAKALAEAAGAKVAGQVSRSTDWLVLGENP
GGKLGEARKLGVPTMTLAEFLTLAADRPAAV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaccgagcctgtcagcggcggcccggcgcgtggcccaactcagcgaggaactg
cggcggtggtcgcgcgtatattataacgagggccggcaagaggtggccgacgcgctctac
gaccaacgtttcgccgagttggaggagctggagcggctgtttcccatgctgcgcctggcc
gattcgcccaccaggcgcgtcggcgcgccgccccagtccagcttcgcggcggtcagccat
ttccggcccatgctctcgctggagtcgcggggcgatttcggcctggtgggcgatctgctg
cgccgcctggccgatgccggccaacccgaggccgcgatcttggcccagcccaagatcgac
gggctatccatcgagttagtctacgaaaacaacctgttgcgcaccgccagcacccgtggc
gacggcgtggtcggcgatgacgtcacgaccaacgccagggtcgtgggcggcataccccac
gccctggaaggcctggcgccggccctggtggtcgtgcgcggcgaggtctacatggaccgc
gccggatttttggacctcaaccgccaactggtggcccagggccaggacggcttcgccaac
ccgcgcaacgccgccgccggcagtctgcgccagcaagaccctttcgtcaccgccggtcgg
cctttgcgctttttcgtcttcgagctggtcaacgccgacgatctgggcctggccagcgac
agcgacgccctgcgcctgctaggccaatggggttttccgctgaccgacgatcatctgcgc
ctgggccgaggggccgagttcgtccgccaggcccacgccgactatctggctcgccgcgcg
gagctgccctttgacatcgatggcgtggcgctcaaggtcgacgacctggccttgcgcggc
gttctgggccagcgcagccgcacgccgcgctgggccgtggcctggaagtttccgccgcgc
caagaggtgacgccggtgctggacgtggtggtgcaggtgggccgcacgggtaagctcacg
cccgtggccctgctggagccggtggacatcggcggggtgaccgtggcccgggccacgctg
cacaatttcgaggaagtggcccgcctggacctgcgggtgggcgatttggcgcgtatggag
cgggccggcgacgtgatcccccgggtggccggcgtggcgcgtcaggccccgcccgagcgg
cgcgggccggccatcgtggcgccgacccattgcccggtctgcggcgcgaccatagtccgc
gacgaaggcggggtcaaccaccgctgcccaaacagcctgggctgtccggcccagcagaag
gcggcgctacgtcactttgcctcgcgggcggccatggacgtggagggcctgggcggcaag
aacgtcgaggccttgtgggagcggggcttcctgagcgatctgccctcgctctacgccctg
gccgcgcgccgcgacgaactggcgggcctgcgcggctggggcgagctgtcggcggacaat
ctcttgcgggccatcgcggccaccaagggcgcggccctggaccgcttcatcttcgccctg
ggcatccccggcgtgggccaagagaccgccaagctgctggcccagcgcctgggctcgctg
gaggccctggtcgccgccgccgacggctggcgcaagccggccaaggatcggcccgcgggg
ctttacctcgacgatatcgccggcgtggggcccaagaccgccgaggatatccagcgattt
tttcaaacgccccagacccgccagacggccctcaagctggccgaactggtcgggccgacc
tgggccgagtcgccgaccccgcgggctggggcgccgctggccggcaagaccatcgtcttc
accggccgcctggagggcctcagccggccgcaagccaaggccctggccgaggccgccggg
gccaaggtggccggccaggtcagccgctccaccgactggctggtgctgggcgaaaaccct
ggcggcaagctgggcgaggcgcgcaaactgggcgtgccgaccatgacgctggccgagttt
ctgaccttggccgccgaccggcctgccgctgtttga
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