Desulfitobacterium dehalogenans: Desde_1417
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Entry
Desde_1417 CDS
T02146
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03030
DNA replication
ddh03410
Base excision repair
ddh03420
Nucleotide excision repair
ddh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Desde_1417
03410 Base excision repair
Desde_1417
03420 Nucleotide excision repair
Desde_1417
03430 Mismatch repair
Desde_1417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ddh03032
]
Desde_1417
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_1417
Enzymes [BR:
ddh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Desde_1417
DNA replication proteins [BR:
ddh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Desde_1417
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Desde_1417
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desde_1417
MMR (mismatch excision repair)
DNA ligase
Desde_1417
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desde_1417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Cdd1
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AFL99840
UniProt:
I4A7A6
LinkDB
All DBs
Position
1426058..1428037
Genome browser
AA seq
659 aa
AA seq
DB search
MSDVSQRIKALREQIEEANYQYYGLDQPTLSDAEYDTLILELIRLEEEHPEFLTSDSPSQ
RVGGYIAKEFPKVRHAEALLSLDNAFNAGDLLEFDRRVRSMVAEVEYVVELKIDGLTVAL
TYEDGVLVRGATRGDGEVGEEITANVKTIPAIPLRLRKSGGRLDVRGEGYMPKGSFLRLN
QEREDAGQPLFANPRNAAAGSLRQLDSKITAQRKLGYFAYQVLTPEGAELASQSAVLDYL
KEQGFSVNPEYRVFTAIEDVITYCEEVVGKRHNYPYDIDGLVIKVNDIAQQRELGFTAKS
PRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTANLTPVFVAGSTVSRATLHNLDNIRT
KDVRIGDRVLIQKAGDVIPEVVKTLPEKRTGSERIFEMPQTCPECQSPVIREEGEAAHRC
TSITCPARQREAIIHFVSRDAMNIDGLGPAVIYQLLEAGLIKDAADLYALEYDPLVQLER
MGKKSAENLLKAIEDSKERGLASLIFGLGIRHVGEKAGKILAQKYGTMEELERAGVEELQ
EIPDVGPAMAQSVAQFFQQESTHHFLDKLRQAGVNMRAQRSAKPQIFAGKSIVVTGSLER
WDRQYVETMIEEFGGKAASSVSKKTAFVVAGEKAGSKLIKAKELGIPVLTEEEFVKLLP
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgtatcacaaagaatcaaggccttacgtgagcaaatcgaggaagctaattat
caatattatggtttggatcagccgaccttaagtgatgcagagtatgacacactcattctg
gagttgattcgtctggaggaagaacacccggaattcctgacttccgattccccatctcag
cgggtcggaggatatattgccaaggaatttcccaaagttcgtcatgctgaagccctcctt
agtttggataatgcttttaatgcaggagatcttctggaatttgaccgcagggttcgttcg
atggtagccgaagtggagtatgtagtggagctcaaaattgacggtttgaccgtcgcttta
acctatgaagatggggttttggttcgtggtgctactcgtggcgatggtgaagtcggtgaa
gaaattacagccaatgtgaagaccatacccgctattcccttgcgacttcgtaaatcgggc
ggccgccttgatgtgcggggagagggatatatgcctaaaggctcgtttttacgacttaac
caagagcgcgaagatgctggacagcctctctttgctaaccctcgcaatgcggcagccggt
tctttacgtcagcttgactccaagattacggctcagcgcaaattagggtattttgcttat
caagtcctgactcccgaaggggcggagctggcttcccagtctgccgtactggattatctg
aaggaacaggggttctcggttaatccggagtatagggtctttacagctattgaagatgtc
attacctattgtgaggaagtggtcgggaaacgtcataactatccttatgatattgacgga
ctggtgattaaggtcaatgatatcgcccagcagcgggagctgggcttcactgccaaaagc
cctcgttgggccatagcttataaatttcctgcggagcaagtggaaaccgttgtagaggat
attgtgattcgagtggggcggacaggtgtacttactcccacagccaatttgactccggtc
tttgtcgcaggatccacggtgagccgggccacgcttcacaacctggataatatccgaacc
aaggatgtccgcataggggaccgtgtcttgattcaaaaggccggggatgtgatccctgaa
gtggtgaaaactctgccggaaaagagaacaggcagtgagcgaatctttgagatgccccag
acctgccctgagtgccaaagtccggtcattcgggaagaaggggaggcagctcatcgctgt
accagtatcacctgtccggcccggcagcgggaagccatcattcattttgtatcccgggat
gcgatgaatattgatgggttgggaccggcggtcatttatcagcttttggaggctggactg
attaaggacgccgcagatctctatgctttggaatatgatcccctggtccaattggagcgg
atgggtaaaaaatctgccgagaatctgctcaaggctatcgaagacagcaaagaacgagga
ttggcttccctcattttcggtctgggaattcgccatgtgggggaaaaggccggcaagatc
ttagctcaaaaatacggaaccatggaagagctggagagagctggggtagaggaattgcag
gagattccggatgtgggtcctgccatggctcaaagcgtcgctcaatttttccagcaggaa
agtacgcaccacttcctggataagctgcgtcaagcaggtgtaaacatgagggctcaacgc
tctgcgaaaccccagattttcgccggaaaaagcatcgtggtgacagggtctttagagcgc
tgggatcgtcaatatgtagaaactatgatcgaagagttcggaggcaaggctgccagcagt
gtcagcaagaaaaccgcctttgtggtcgccggagaaaaagcgggttcaaaactcatcaag
gcaaaagaattggggattccagttttaactgaagaggagtttgttaagctgttgccctag
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