Deinococcus deserti: Deide_06510
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Entry
Deide_06510 CDS
T00880
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ddr
Deinococcus deserti
Pathway
ddr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ddr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deide_06510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddr03019
]
Deide_06510
03400 DNA repair and recombination proteins [BR:
ddr03400
]
Deide_06510
Enzymes [BR:
ddr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Deide_06510
Messenger RNA biogenesis [BR:
ddr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Deide_06510
DNA repair and recombination proteins [BR:
ddr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Deide_06510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RNase_T
Helicase_C_2
ResIII
DEAD_2
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ACO45500
UniProt:
C1D0X6
LinkDB
All DBs
Position
780509..785560
Genome browser
AA seq
1683 aa
AA seq
DB search
MPTKLVTSYVILDTETTSVDRAEARLLEVAAVRVEDGRICDTLQLLVSGERIPREVAELT
GIRQEELDRDGQPLPDVLKQVLAFMGDLPVVGHNAQGFDVPLLKRLCREQSLKFQVPFVF
DTLLLAPLAFAAVVPPVEGYGLEGLHARFCGDVHDDAHRTLADCAATSRLLAYMVERLRA
LPEDQKALISALPVPELALAFQPRSITKAELERLSSRAAGALTEVSAVWSEGRLPQQVSD
MLPSPRPGQLKMAESVSATLSGPGRLVVEAPTGTGKTRAYLYPALLRGEPGKPVVISTHT
KQLQNQIVKEAQHLKDAGFKVRVVALKGQSNYICPERLQLLLTRRFRPDEVPEADQYEAN
EKDLSAGVETASDVAEDQRPGRLIMLPGQARAVALLTLHAQAGEYGALPPSALTRSPEYL
QAKIVTSTVAKRCRDACPFSTCCSYHRTQALVPQADVVVVNHALLLRNQLGGLEQENLPF
DRVVVDEAHDLQDAAESALRQEIGSDAILSVAREFLRRTHGESAGLLPSIEKAARVAQDA
NLATLSQKAATAFDVLVARVDTWQAALQAFAMQFGQGSEAFGFQAAVDPLPMQSAEWRAV
TRASEELTSSLKYCAGFIPSLAQRSSYQMDLEALLARLNDQIDTLGVLLARSLPGAHVYA
VTANGDSASIWAVPLWLSSVLEELWKKTSSLVFTSATLRVPGTWDAKGSGDVADFGVFER
DLALPESSYMVLPPVLPYDKGYVLLTSHLPLVHHPDFSGLVGQEIDNLVTQTPNQALHIF
TANERLRRASRHIKKRHLNSVRDGTQRTVQDLHGDGEWHALGSAGFLQGVDIRDLTLVSL
DKTPFPIPDLVLEAQRRDVNDFETYWNTLYLPRAVLKFVQGFGRLVRNDREGLPAGAFVV
WDKRLAFAHYQDRFLGALPIPAGNVRRARNREDFYAQLGHLWQKPLTFDELVAPKMQAIK
RYREELKGLKDPERQRKLEEALVDLFEFPPGGFREGQYSGIAAALDGIDVLSVMPTGAGK
SLVFQLPAFLGEGYTVVVSPLVALIQDQVSRLQQLGLPAAGLWGGLSRAEQDSTLEDVRC
GRVKLLYLAPERIRKGAAVRKLLQGQPPERVVFDEAHTLLEWGHDFRPDYLHVRQELQNL
GVKAAVSAFTATANPETRRKLIQVLGMDGPERIELGVRRHNLYYEVVDVQTRIGGRKRRN
KAASVEDKPEGNARNVSRDEVLLTMLAGLKTNEDTRDGRAIVYVGSRAKAERLTAMIGEI
GVEVAAYHAGLSPAVRTELLDQFQARFIRVMVATNAFGMGVDAPDIHLVVHYDAPLSLES
YVQEAGRAGRDPNIQARAVLLWSNGSERRAKYLIDHGYPDKEGAQTLLNVMKNGPAFPTL
SELGQCDGVDVNVLPTLLHLLEVSGALRYSYVPGLCRVYPYYGVDLPDDPAVRDLVERTR
KEPVHLSRLYRDRAAAIEDRLIELQREGKLGVMLLEPALRIDLRQDRIGLTSYEERVLNL
KRAKHERFREFTRFLLDRQTCRGMHLQLHFEHRGDRCGNCDVCAPERPAPWEGIDVDFAS
LWNLRKELLRLLTHLEKQEHFVGRSTLVRILRNEEVKGFQGGQDGQAGNAPTAKPFHWKE
KSAPNFGKLRFIKAQDIRSDLEALCGDGLAQVEQRSFRSGGQPLPVVILTDRGRQVAKSW
SVS
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgcccacaaagctcgtgacgtcatacgtgattctcgatacggaaaccacctcagtagac
cgcgcggaagctcgcctgcttgaggtggcggctgtacgtgtcgaggacggccgcatctgc
gacacgctgcaattgctggtctccggtgagcgtattccccgtgaagtcgcggagctgacg
ggcatccgacaggaggaactggaccgtgatggtcagcctctcccggacgtcctgaagcag
gtacttgccttcatgggtgatttaccggtcgtggggcacaacgcgcaggggttcgatgtt
ccgctgctaaagcgcttgtgccgggagcagagcctgaagttccaggtgccgttcgtgttc
gacaccctgcttctcgccccgctggccttcgctgccgtggtccctcccgtagagggctac
ggcctagaaggactccacgcccgcttctgcggtgacgtacatgacgatgcgcaccggaca
ctagcggactgcgctgcgacgtcacggctccttgcctacatggtcgaacgcttacgggcc
cttccagaagaccagaaggccctcatctcggcgcttcccgtccctgaactggccctggcg
tttcagccccgatctattacgaaggccgaattggaaaggctctcttcacgcgctgcaggc
gccttaacagaggtcagcgctgtgtggagtgaaggccgacttcctcagcaggtgagtgac
atgctgccctcgccgcggcccggtcagctgaagatggccgaaagcgtgtcggcaacgctc
agcgggccgggccgcttggtggtcgaagctcccaccggtactggaaaaacccgcgcttac
ctttatccggcgctgctgcgcggcgaacctgggaagcctgtggtgatcagcacccacacc
aagcaactacagaatcagatcgtcaaggaggcgcagcacctcaaggatgcagggtttaag
gttcgtgtcgtggccctgaaagggcagagcaattacatctgtccagaacggttgcaactc
ctgctcacgcgccggtttcgccctgacgaagtgccggaggcagatcagtacgaagcgaat
gagaaggacttgtcagcaggcgttgaaactgccagtgacgtagccgaggaccagcgcccc
ggccggctgatcatgctcccggggcaggcgcgggccgtggcccttttgaccttgcacgcg
caggctggagagtacggcgcgttaccgccaagcgctttgacccgctctccggagtatctg
caagccaagatcgttacgtcgaccgttgccaaacgctgccgggatgcttgcccgttctcc
acatgctgctcgtatcaccgcacgcaagcactggtgccgcaggccgacgtggtcgtcgtg
aaccacgctttgttgctgcgcaaccaactgggtggcctcgagcaggagaatctgccgttc
gaccgtgtggtggttgacgaagctcacgatctgcaggacgcagcagaatccgcccttcgc
caggagattggcagtgacgcgatcctgagcgtcgctcgggagtttctccgccgcacccat
ggggaaagcgccgggttgctgccgagcattgagaaggccgcgcgagttgcccaagacgcg
aatctagccacgctttcgcagaaggccgccacagccttcgacgtgttggtcgcgcgggtc
gacacctggcaggcagccctgcaagccttcgccatgcagtttggtcagggcagcgaggcc
ttcggatttcaggcagccgttgaccccctgccaatgcagagtgccgagtggcgcgctgtg
actcgcgcttcagaggaactgaccagtagcctcaagtactgcgctggcttcattccttca
ctagcgcagcgttcgagctatcagatggacctggaggcgctccttgcccgtctcaatgac
cagatcgatacgctaggggtcttgctcgcaaggtcactgcctggagcgcatgtgtacgct
gttacggcgaatggggacagcgcctcgatctgggccgtcccattgtggctttcctccgta
ctagaggaactgtggaaaaaaaccagcagcctggtctttacgagcgcaacgttgcgcgtg
cccgggacatgggacgctaagggaagcggtgatgttgccgacttcggtgtgttcgagcgg
gatctggcgttgccggagtcaagttacatggtgctgccgcccgtcttgccgtacgacaag
ggatacgttctgctcacgagccacctgccgctggtgcaccacccggacttctccggcctc
gtcgggcaagagatcgacaacctggtcacgcagacgccaaaccaggcattgcatattttc
acggccaatgaacggctgcgccgcgcgagtcgacacatcaaaaagcggcacctcaattct
gtgcgtgatgggacgcagcgcactgtgcaggacctccacggcgatggagaatggcacgct
cttggctcagccgggttcctgcagggcgtcgacatccgggacctgaccctcgtcagcctc
gacaagacgccctttcccatcccggacctcgtgctggaagcgcagcgaagggacgtgaac
gatttcgagacgtactggaacacgttgtacctgccaagggccgtattgaagttcgtgcag
gggtttgggcgtctggtccgcaacgatcgtgaaggcctcccggcgggtgcttttgtcgtc
tgggataagcgcctcgccttcgctcactatcaggaccgcttccttggggcactgccgatc
ccggccgggaatgtccggcgagcgcgtaaccgggaggacttttacgcgcaacttgggcac
ttgtggcagaagcccttgacctttgacgagctcgtcgcgccgaaaatgcaggcgattaag
cgctaccgcgaggagctgaagggtctcaaagatccggagcggcaacgcaaactcgaggaa
gcccttgtggacctctttgaattcccaccgggcggtttccgtgagggccagtactcgggc
attgccgcggcactcgacggcattgacgtgctttccgtgatgccgaccggcgccgggaaa
agcctggtgtttcagctgcctgcgtttcttggtgaagggtatacggtggttgtttccccc
ctcgtggcgttgatccaagatcaggtgagccgcctgcagcaactcggtcttcccgcggcg
ggcctctggggagggctgtcacgcgcagagcaggacagcacactggaggacgtgcgctgc
ggccgggtcaagctcctgtacctcgcgccagagcgcattcgcaagggggctgctgtgcgc
aaactcctccaggggcaaccgccggaacgcgtggtgttcgatgaagcgcacacgctcctg
gaatggggccatgacttccgcccagattacttacacgtacgtcaggaattacagaacctc
ggtgtgaaagcggctgtcagtgcctttactgccaccgcaaacccggagacacgccggaaa
ctgattcaagtccttggcatggacgggcctgaacgcattgagctcggcgtaaggcggcac
aacctgtattacgaggtggtagacgtccagacccgcattggtgggcgcaagaggcgtaat
aaagcagcgtctgttgaagacaagcctgagggcaacgcgcgaaatgtcagtcgggacgag
gtgctgctcacgatgctcgcgggcctcaaaaccaacgaggatacccgcgacgggcgggcc
atcgtctacgttggcagccgtgcaaaagctgagcgcctcacggccatgatcggtgaaatc
ggcgtggaggttgcggcttaccacgctggcctttccccggccgtgcggacggaattgctc
gaccagttccaggcccggttcatccgtgtgatggtcgccacaaatgccttcgggatgggc
gtagacgccccagacatccatctcgtggtccattacgacgcccctctttctttagaaagt
tacgttcaagaggctgggcgtgccggtcgcgatccgaacattcaggcacgagctgtcctg
ctctggagtaatggcagcgagcggcgggcgaagtacctcattgatcacggatacccggat
aaagagggggcgcagaccctgctcaacgtcatgaagaacggtccggccttcccgaccctc
tcagagcttgggcagtgtgacggcgttgacgtcaatgtgctgccgacgctgctgcacctg
ctggaagtcagtggggccctgcggtacagctatgtgccaggcttgtgccgcgtgtatccg
tattacggcgtggacttgccggacgacccggccgtccgggatctcgtggagcgcacccga
aaagaacctgtgcacctctcccgtctgtaccgagatcgggcagcagccatcgaggaccgg
ctgatcgagttgcagcgggaaggcaagctcggcgtgatgctcctcgaacccgcgctgcgc
atcgacctgcggcaggaccggatcggcctgaccagctacgaagagcgggtgctgaacctc
aagcgggctaagcacgagcggttccgcgaattcacgcggttcctcctcgaccgccagacc
tgccgtggcatgcacctgcagctgcattttgaacaccgcggggatcgctgcggcaactgt
gatgtctgcgctcccgaaagacccgccccttgggaaggcattgacgtggacttcgcaagc
ctctggaatctacgcaaggaactgctgcgactcctcactcacctggaaaaacaggagcat
ttcgttggaagaagcacgctggtacgaattctgcgcaacgaagaagtcaaagggttccag
gggggccaggacggccaagccggaaacgcccccacggctaaaccattccactggaaggag
aaaagcgcaccgaacttcgggaaattgcggtttatcaaggcacaggacatccgcagtgat
ctcgaagcgctctgcggtgacggtctagctcaggtggaacagcgcagcttccggtccggc
ggccagccccttccggtggtcatcctcacagaccgcgggcgacaggtggctaagtcgtgg
agcgtgtcatga
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integrated database retrieval system