Dehalococcoides mccartyi GT: DehalGT_0540
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Entry
DehalGT_0540 CDS
T01182
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
deg
Dehalococcoides mccartyi GT
Pathway
deg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
deg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DehalGT_0540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
deg03021
]
DehalGT_0540
03400 DNA repair and recombination proteins [BR:
deg03400
]
DehalGT_0540
Enzymes [BR:
deg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DehalGT_0540
Transcription machinery [BR:
deg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DehalGT_0540
DNA repair and recombination proteins [BR:
deg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DehalGT_0540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADC73907
LinkDB
All DBs
Position
501491..505312
Genome browser
AA seq
1273 aa
AA seq
DB search
MVSMLPKADAATGVIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEEGLRELIEEISPIKDF
VGNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLFFGDI
PLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLIPSRGAWLEFETS
NRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIKD
EISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSREVGE
NRALTREDIVAIIQRIIMVNNGQDNPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVAR
ERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEITNKRRLSAMGPG
GLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYRKVYS
KLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDSFKIISKLPECDILVMPFVSAEVKY
MPADEEDRYIIAQANTRLDEKGYFLDDRIEARLAERYVVEPPDKIDYMDVSPKQIFSVAA
SLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAARYSGQVIFAKHAGVAS
SVTSEKIIIRTAEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIAAGQVLADSSATENG
ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEARDTKLGVEEITR
DIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKARE
VKDTSLRMPHGEWGKVINVRIFSRDSGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGN
KGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVATPV
FDGADDTVIEDALARSWLSAKAGAIDMSPENKRPSADAHKAIEWIKQQGFDGKKIFDEKH
PGLAKEVSLKLWLKDMGVDASALSGAELEKKAYDVSSQSRLPSPIVGKSVLRDGRTGETF
DQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAY
GTAHNLQEMLTIKSDDIAGRAKAYESIVKGEDVLQPGVPESFKVLVKELQSLGLAVEVIN
EEVKIAPSEKVSSLNEGNLPASDEISAEILPETLYANTEDISEDSMMSVIDADDQDLVVS
SNDEEVSENDERS
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggtatctatgttaccgaaggccgacgccgccactggtgtaatccgcaaatcttatgcc
caactacccgaggttgtcaatgtacctaacctgatagagatgcagttgcagtcttttgtc
tggtttcaagaggagggtctccgtgagctgattgaggagatttctcccatcaaagacttc
gtgggtaacaggctggagctggaattcataggctacgaattcagagagccccgtttatcc
gaatacgaatgcacccagcgtgaccagacctactctgtacccctgtacgtaaaggccagg
ttgattgtaaaaactaccggtgaaatcaaagaaccctttgatctgttctttggggatatt
ccccttatgaccgccttgggtacatttatcaccagcggtaccgaacgggtagtggtcagc
cagctgctgcgttcaccgggtgtctactttaccatttcagatgacccggcaaccggccgt
cccctctgccataccaaccttattcccagcaggggtgcttggcttgaatttgaaacttcc
aaccgtgatgttatttcagtaaagattgacggacgccgcaagattcccgtcagcaccctg
ttgcgtgccataggttattccgatgatctggatattttaaacctgtttgaggttattgat
aatgaccccgaacgccactatatccagtccagtattgaccgtgatcccctgataaaagat
gagattagtgcccttattgatatttacagccgcttgcgtccaggtgatccgccaaacgcg
gataacgcccgcaagcttattaatgaaatgttctttgacccccagcactatgatctgggc
aaggtaggccgttacaaggttaaccgccgtctggaattgccttcccgtgaggttggtgaa
aaccgtgcccttacccgtgaagacatagtagccattatccagcggattatcatggtcaat
aacggccaggataatccggatgatattgaccatttgggcaaccgaagaatccgcactgta
ggtgaacttgttcaaaaccagttccgcatagggctggtgcgtttggaaagagttgcccgt
gaacggatgagcattgttaatctggaaatggttacacccagcgctctggttaatatccgc
cctgtggtttcagccgttaaggagttctttggcggttcacagctttcccagtttatggat
cagactaaccctctggctgaaataaccaataaacgccgtctgtctgccatgggccccggc
ggtctttcccgcgagagggccggctttgatgtgcgcgatgttcactactctcattacggg
cgtatctgccccattgagacacctgaaggcccgaacattggtcttatcggttctctggct
acctatagccggattaaccgctacggctttgtggagaccccttaccgcaaggtttattca
aaactgaaaaataatgataaaaaactggttggtcttaaactgaagactgaaatcagtgaa
aaaggcaaagtactggcggctgccggcagtacaatcagcgaagacagcttcaagattatt
tcaaagctgcctgagtgtgatattttggttatgccttttgtgtctgccgaagtcaaatat
atgcctgcagacgaagaagatcgctatataattgctcaggctaatacccgtttggacgag
aagggctatttcctcgatgacaggattgaagcccgtttggctgaaagatatgtggtagag
cctccagataagattgattatatggacgtttcgcccaagcagatcttcagtgtagcggct
tcgctcattcccttccttgagcatgatgatgctaaccgtgcccttatgggtgcgaatatg
caacgccaggctgtgcctttgcttcgggctgaggcacctatggtggctacaggtatggaa
cgtgaagcggccagatactccggtcaggtcatctttgccaaacatgccggtgtagccagt
tcggttaccagtgaaaaaataataatccgtaccgccgaaggcggacacgatgaatacctg
ctgaagaaatttgttcgtaccaatcagggtacctgcataaatcagcatgccattataaac
aaggggcagaagatagcagccgggcaggtactggctgacagctctgccactgaaaacggc
gaactggctttggggcaaaactgtgtggtggcctttatgagctggcagggtttcaactat
gaagatgccattatccttagtgaacggctggtacgtgaagatgcctttacctccattcac
attaccaagcacgaacttgaagctcgtgataccaaactgggtgttgaagaaataacccgt
gatattcctaacgtaggtgaagaaagcctgcgcgaactggacgaagacggtattatccgt
ataggggctgaagttggccctgacgatattctggttggtaaaatcacccccaagggtgaa
accgaactttcagctgaagaaaaattgcttagggctatcttcggcgaaaaagcccgcgaa
gttaaagacacttcactccgtatgcctcatggtgaatggggcaaggttataaatgtaagg
attttctcccgtgacagcggtgatgacctgcctgccagagttaataaatgggtacaggtc
tgggttgcccagaaacgcaaggtttcagtgggtgacaaactggccggccgccatggcaac
aagggtgttatatccataattgccccggtagaagatatgccttacctgcctgacggcact
ccggtggacgtggttttgaaccccatcggcgtaccttcacgcatgaacctggggcagatt
ctagaaactcatctgggctgggcagggcatctgctgggctttagggtggccacccccgta
tttgacggtgcagatgatactgtaattgaagacgctctggcccgttcttggctctctgcc
aaggccggtgcaatagatatgagccctgaaaacaaacgtcccagtgcagacgctcacaag
gctatagagtggataaaacagcagggctttgacggcaagaaaatatttgatgaaaagcac
cccggtctggccaaggaagtcagccttaagctttggcttaaggatatgggtgtagatgcc
tccgctttaagcggggctgaactggaaaagaaagcttacgacgtaagcagccaaagccgc
ttgccttcgcctattgtgggtaaatcagtgttgcgtgacggtcgtaccggcgaaaccttt
gaccagccggtaaccgtaggcaatatgtatatccttaaacttatccatctggtggaagac
aaggtacatgcccgtgctaccggtccttactcactcatcagccagcagcctctgggcggc
aaagcccagttcggcggccagcgcttcggtgaaatggaagtttgggctatgtacgcttac
ggtacggctcataaccttcaggaaatgctgactatcaagtcagacgatattgccggacgt
gccaaggcttatgaatccatagtaaagggtgaggatgtgctccagcccggtgtacccgaa
tccttcaaggtattggtaaaagaactgcagagcctggggctggcagttgaagtaataaat
gaagaagtcaaaattgctccatctgaaaaggtgtcctctttaaatgagggaaacttgccg
gcgagtgatgagatttctgccgaaatacttcctgaaactttgtatgccaatacagaggat
atcagtgaagattccatgatgtcggtaatagatgccgatgaccaagatttggtagtgtca
tcaaatgatgaagaggtatccgaaaacgatgaacgaagttaa
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