KEGG   Dehalococcoides mccartyi GT: DehalGT_0540
Entry
DehalGT_0540      CDS       T01182                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
deg  Dehalococcoides mccartyi GT
Pathway
deg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:deg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DehalGT_0540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:deg03021]
    DehalGT_0540
   03400 DNA repair and recombination proteins [BR:deg03400]
    DehalGT_0540
Enzymes [BR:deg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DehalGT_0540
Transcription machinery [BR:deg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DehalGT_0540
DNA repair and recombination proteins [BR:deg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DehalGT_0540
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: ADC73907
LinkDB
Position
501491..505312
AA seq 1273 aa
MVSMLPKADAATGVIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEEGLRELIEEISPIKDF
VGNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLFFGDI
PLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLIPSRGAWLEFETS
NRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIKD
EISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSREVGE
NRALTREDIVAIIQRIIMVNNGQDNPDDIDHLGNRRIRTVGELVQNQFRIGLVRLERVAR
ERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEITNKRRLSAMGPG
GLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYRKVYS
KLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDSFKIISKLPECDILVMPFVSAEVKY
MPADEEDRYIIAQANTRLDEKGYFLDDRIEARLAERYVVEPPDKIDYMDVSPKQIFSVAA
SLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAARYSGQVIFAKHAGVAS
SVTSEKIIIRTAEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIAAGQVLADSSATENG
ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEARDTKLGVEEITR
DIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKARE
VKDTSLRMPHGEWGKVINVRIFSRDSGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGN
KGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLGFRVATPV
FDGADDTVIEDALARSWLSAKAGAIDMSPENKRPSADAHKAIEWIKQQGFDGKKIFDEKH
PGLAKEVSLKLWLKDMGVDASALSGAELEKKAYDVSSQSRLPSPIVGKSVLRDGRTGETF
DQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAY
GTAHNLQEMLTIKSDDIAGRAKAYESIVKGEDVLQPGVPESFKVLVKELQSLGLAVEVIN
EEVKIAPSEKVSSLNEGNLPASDEISAEILPETLYANTEDISEDSMMSVIDADDQDLVVS
SNDEEVSENDERS
NT seq 3822 nt   +upstreamnt  +downstreamnt
atggtatctatgttaccgaaggccgacgccgccactggtgtaatccgcaaatcttatgcc
caactacccgaggttgtcaatgtacctaacctgatagagatgcagttgcagtcttttgtc
tggtttcaagaggagggtctccgtgagctgattgaggagatttctcccatcaaagacttc
gtgggtaacaggctggagctggaattcataggctacgaattcagagagccccgtttatcc
gaatacgaatgcacccagcgtgaccagacctactctgtacccctgtacgtaaaggccagg
ttgattgtaaaaactaccggtgaaatcaaagaaccctttgatctgttctttggggatatt
ccccttatgaccgccttgggtacatttatcaccagcggtaccgaacgggtagtggtcagc
cagctgctgcgttcaccgggtgtctactttaccatttcagatgacccggcaaccggccgt
cccctctgccataccaaccttattcccagcaggggtgcttggcttgaatttgaaacttcc
aaccgtgatgttatttcagtaaagattgacggacgccgcaagattcccgtcagcaccctg
ttgcgtgccataggttattccgatgatctggatattttaaacctgtttgaggttattgat
aatgaccccgaacgccactatatccagtccagtattgaccgtgatcccctgataaaagat
gagattagtgcccttattgatatttacagccgcttgcgtccaggtgatccgccaaacgcg
gataacgcccgcaagcttattaatgaaatgttctttgacccccagcactatgatctgggc
aaggtaggccgttacaaggttaaccgccgtctggaattgccttcccgtgaggttggtgaa
aaccgtgcccttacccgtgaagacatagtagccattatccagcggattatcatggtcaat
aacggccaggataatccggatgatattgaccatttgggcaaccgaagaatccgcactgta
ggtgaacttgttcaaaaccagttccgcatagggctggtgcgtttggaaagagttgcccgt
gaacggatgagcattgttaatctggaaatggttacacccagcgctctggttaatatccgc
cctgtggtttcagccgttaaggagttctttggcggttcacagctttcccagtttatggat
cagactaaccctctggctgaaataaccaataaacgccgtctgtctgccatgggccccggc
ggtctttcccgcgagagggccggctttgatgtgcgcgatgttcactactctcattacggg
cgtatctgccccattgagacacctgaaggcccgaacattggtcttatcggttctctggct
acctatagccggattaaccgctacggctttgtggagaccccttaccgcaaggtttattca
aaactgaaaaataatgataaaaaactggttggtcttaaactgaagactgaaatcagtgaa
aaaggcaaagtactggcggctgccggcagtacaatcagcgaagacagcttcaagattatt
tcaaagctgcctgagtgtgatattttggttatgccttttgtgtctgccgaagtcaaatat
atgcctgcagacgaagaagatcgctatataattgctcaggctaatacccgtttggacgag
aagggctatttcctcgatgacaggattgaagcccgtttggctgaaagatatgtggtagag
cctccagataagattgattatatggacgtttcgcccaagcagatcttcagtgtagcggct
tcgctcattcccttccttgagcatgatgatgctaaccgtgcccttatgggtgcgaatatg
caacgccaggctgtgcctttgcttcgggctgaggcacctatggtggctacaggtatggaa
cgtgaagcggccagatactccggtcaggtcatctttgccaaacatgccggtgtagccagt
tcggttaccagtgaaaaaataataatccgtaccgccgaaggcggacacgatgaatacctg
ctgaagaaatttgttcgtaccaatcagggtacctgcataaatcagcatgccattataaac
aaggggcagaagatagcagccgggcaggtactggctgacagctctgccactgaaaacggc
gaactggctttggggcaaaactgtgtggtggcctttatgagctggcagggtttcaactat
gaagatgccattatccttagtgaacggctggtacgtgaagatgcctttacctccattcac
attaccaagcacgaacttgaagctcgtgataccaaactgggtgttgaagaaataacccgt
gatattcctaacgtaggtgaagaaagcctgcgcgaactggacgaagacggtattatccgt
ataggggctgaagttggccctgacgatattctggttggtaaaatcacccccaagggtgaa
accgaactttcagctgaagaaaaattgcttagggctatcttcggcgaaaaagcccgcgaa
gttaaagacacttcactccgtatgcctcatggtgaatggggcaaggttataaatgtaagg
attttctcccgtgacagcggtgatgacctgcctgccagagttaataaatgggtacaggtc
tgggttgcccagaaacgcaaggtttcagtgggtgacaaactggccggccgccatggcaac
aagggtgttatatccataattgccccggtagaagatatgccttacctgcctgacggcact
ccggtggacgtggttttgaaccccatcggcgtaccttcacgcatgaacctggggcagatt
ctagaaactcatctgggctgggcagggcatctgctgggctttagggtggccacccccgta
tttgacggtgcagatgatactgtaattgaagacgctctggcccgttcttggctctctgcc
aaggccggtgcaatagatatgagccctgaaaacaaacgtcccagtgcagacgctcacaag
gctatagagtggataaaacagcagggctttgacggcaagaaaatatttgatgaaaagcac
cccggtctggccaaggaagtcagccttaagctttggcttaaggatatgggtgtagatgcc
tccgctttaagcggggctgaactggaaaagaaagcttacgacgtaagcagccaaagccgc
ttgccttcgcctattgtgggtaaatcagtgttgcgtgacggtcgtaccggcgaaaccttt
gaccagccggtaaccgtaggcaatatgtatatccttaaacttatccatctggtggaagac
aaggtacatgcccgtgctaccggtccttactcactcatcagccagcagcctctgggcggc
aaagcccagttcggcggccagcgcttcggtgaaatggaagtttgggctatgtacgcttac
ggtacggctcataaccttcaggaaatgctgactatcaagtcagacgatattgccggacgt
gccaaggcttatgaatccatagtaaagggtgaggatgtgctccagcccggtgtacccgaa
tccttcaaggtattggtaaaagaactgcagagcctggggctggcagttgaagtaataaat
gaagaagtcaaaattgctccatctgaaaaggtgtcctctttaaatgagggaaacttgccg
gcgagtgatgagatttctgccgaaatacttcctgaaactttgtatgccaatacagaggat
atcagtgaagattccatgatgtcggtaatagatgccgatgaccaagatttggtagtgtca
tcaaatgatgaagaggtatccgaaaacgatgaacgaagttaa

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