Dehalococcoides mccartyi GT: DehalGT_0703
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Entry
DehalGT_0703 CDS
T01182
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
deg
Dehalococcoides mccartyi GT
Brite
KEGG Orthology (KO) [BR:
deg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
deg03016
]
DehalGT_0703
Enzymes [BR:
deg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DehalGT_0703
Transfer RNA biogenesis [BR:
deg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DehalGT_0703
Prokaryotic type
tRNA splicing ligases
DehalGT_0703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADC74069
LinkDB
All DBs
Position
667541..669001
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AA seq
486 aa
AA seq
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MTSPWHGILKKIDDYRWEIPQSYKVGMRVPGLVYASERMLNQIWEEHAIEQIANVAFLPG
IMGRSMAMPDIHWGYGFPIGGVAATRISDGVISPGGVGFDINCGTRLLRTNLSVEEVQPK
IDELLNELFSKIPSGVGSSGNIKLSGTDIDNVMTRGGSWALEKGMGEAEDIKLTEESGSL
SGANPDKVSNKAKTRGASQLGTLGSGNHFLEVQVVDEIFDPEVAAVFGVQALGQVLFLIH
TGSRGLGHQVCTDYVQLLNEAVKKYGINLPDRQLACAPLKSDDGQNYLAAMACAANYAWA
NRQCITHWARDAFMKVFEKGRLDLGMDQIYDVAHNIAKIEEHMVDGKVQNVCVHRKGATR
SFPAGRPEIPAVYRKVGQPVIIPGDMGRYSYVAVGTETAMRETFGSTCHGAGRILSRGAA
KKTTSGTQLLDTLRSQGISIRVGDIGSLAEEASEAYKDVADVVEVTHKAGIARNIFKTRP
LGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcccgtggcatggaatacttaaaaaaatagatgactaccgttgggaaatcccc
cagagctacaaagtaggtatgagagtgcccggtctggtatatgccagtgaacgtatgctc
aatcaaatatgggaggagcatgctatagagcaaattgccaatgtggcttttttgcccggt
attatgggcaggtctatggctatgcctgatattcattggggttacggtttccccatcggc
ggagtggccgctaccagaataagtgacggggtaatctcacccggcggcgtaggttttgat
ataaactgcggaacccgccttttaaggacaaacctcagtgttgaagaagttcaacccaag
atagatgagcttttgaatgagcttttttccaaaataccctccggggtgggtagcagcggt
aatataaagctaagcggaacagatatagataatgtaatgacccgtggcgggagctgggct
ttggaaaagggtatgggcgaagccgaagacattaaactgactgaagaatccggcagttta
tctggtgctaatcccgacaaggtttccaataaggccaagaccagaggtgcatcccaactg
ggtacactgggttcaggcaaccattttttggaagtacaggttgtagatgaaatatttgat
cctgaagtagcggcggtgttcggagttcaggcgctgggtcaggtactttttcttatccat
accggttcacggggtttggggcatcaagtatgtactgactatgtgcaactgttaaatgaa
gcagtcaaaaaatatggcataaatttgcctgaccgccagctggcttgtgccccgctaaaa
tcagacgatgggcagaactatctagccgctatggcctgtgccgccaattatgcttgggct
aaccgccagtgcatcacccactgggcacgtgatgccttcatgaaggtatttgaaaaaggc
cggcttgatttaggtatggaccagatatacgatgtagcccataatattgccaagatagaa
gagcatatggtagacggcaaagtgcagaatgtatgtgtccaccgtaaaggtgccacccgt
tctttccctgccggccgccctgagataccggctgtttaccgaaaagtcggacagcctgtt
ataatacccggagacatgggcagatactcgtatgtagctgtaggtaccgagactgccatg
cgtgaaactttcggttctacctgccatggcgcaggccggatactcagccgcggtgcggct
aagaaaactacttccggtacacaactgctggatactctcaggtctcagggtataagtata
agggtgggtgacataggcagtctggcagaagaagcctcagaagcctacaaagatgtggct
gatgtagtggaagtaacccacaaagcaggtattgcccggaatatatttaaaaccagacca
ttaggagtaatcaaaggttag
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