Cavenderia fasciculata (cellular slime mold): DFA_03243
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Entry
DFA_03243 CDS
T02668
Symbol
ddx17
Name
(RefSeq) putative RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_03243 (ddx17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_03243 (ddx17)
03009 Ribosome biogenesis [BR:
dfa03009
]
DFA_03243 (ddx17)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_03243 (ddx17)
Spliceosome [BR:
dfa03041
]
Complex A
U1 snRNP components
U1 related factors
DFA_03243 (ddx17)
Complex B
DFA_03243 (ddx17)
Ribosome biogenesis [BR:
dfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
DFA_03243 (ddx17)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
14877526
NCBI-ProteinID:
XP_004362848
UniProt:
F4PH13
LinkDB
All DBs
Position
Unknown
AA seq
806 aa
AA seq
DB search
MSYNNSNRNSGGRDYPPSSSSAGGYSRPPSSYSQPPPPPPSGAGGRDYSSGPVRDYSYTT
SSAPSSSSYPSGGGGGRGSGDSYGGGRDYSRSDSYQPRGGGGDYRSGSSSYPSRGGDYGR
GGGGDYRSNSSSDYRNDYRSPAGSSTSGGYQNGGGGRDYRSGGGSNDYRSSSSSYGGGSQ
QPIHNITNGSYTAPPPPPSSSSTPSSNYGGSYSSGSNSSSSYYSAPPPTSSSSSAPSSSS
YQNGYNSSSSSSAYPSSSSSSSTYPSSSSSSYNSGAGRDYGNSSSGGSSGYTSSSYGGGG
GSSSSYGSSSNGNYSSSYSGNGSSSSSSYGGGSSGGYSSGGLGSKLNKIDYSTIELTKFE
KNFYKEDSEVSAMSQDEVRQYREKHEITVFSAKNNDIPNPITSFGFSHFPSYIMSEIAVL
GFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFLLPAIVHINAQPYLETGDGPIVLV
LTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALRSGVEIVVATPGRLIDFL
ERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQTLMFSATWPKSVQSLAAD
FLVDPIQVKIGSAELSANHKVTQHIEICEKMDKQTKLFQYLKSIEPGAKCIIFLETKSGV
GMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLIATDVASRGLDVKDIKYVI
NYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDLVTVLAEASQYVPPQLEQM
VPNKFKSITDYKSQNRYNPYRRNNGQ
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagttacaataatagcaatagaaatagtggaggtagagattatcccccatcgtcatca
tcggcgggtggatatagcagacctccttcttcatattctcagccacctcctccacctccc
tctggtgctggcggtcgagactactcgtctggtcccgtaagagactactcgtacacaacc
tcgtcagctccatcttcatcgtcgtatccaagcggcggcggtggtggcagaggatcaggt
gactcgtacggtggcggacgtgactatagccgtagcgactcttaccaacctcgtggtgga
ggtggtgactaccgatcgggttcgtcatcctacccaagcagaggtggtgattatggcaga
ggtggtggtggtgactaccgtagcaacagcagcagcgactatcgtaacgactatagatca
cctgccggctcatctacctctggtggataccaaaatggaggtggtggtcgcgactaccgt
agtggcggcggatcaaacgactatagatcatcgtcttcatcgtatggcggtggctcacaa
caaccaattcacaacattaccaatggatcgtacactgctccaccaccaccaccttcatcc
tcctccaccccatcatccaactatggcggttcatacagcagcggctccaactcgtcatca
tcatactatagcgcaccacctccaacctcttcctcatcgtcagcaccaagctcctcatct
taccaaaacggatacaactcgtcgtcatcgtcatcggcctatccatcttcatcgtcgtca
tcgtcgacttatccttcatcgtcgtcttcatcatacaacagtggtgctggcagagactat
ggtaactcgtcgtcgggtggctcgtctggatacacctcttcatcttatggtggtggtggt
ggcagctcatcatcttacggtagcagcagcaacggaaactactcatcgtcgtacagcggc
aacggttcgtcatcttcatcatcgtacggaggtggctcctctggcggctacagctcgggc
ggtctcggatccaagctcaacaagatcgattactcgaccatcgaattgaccaaatttgaa
aagaatttctacaaggaagattctgaagtatctgccatgtcacaagacgaagtcagacaa
tacagagaaaagcatgaaatcactgtattcagtgcaaagaataatgatattccaaatcca
atcacctcttttggtttttctcatttcccaagttatattatgagcgaaattgcagtattg
ggattcacagcaccaacatctattcaatgtcagtcatggccaatcgcattaaagggacgt
gatatgattggtttggctgaaactggttcaggcaagactcttgctttcttgttgccagcc
atcgttcatatcaacgctcaaccatacctcgagactggtgatggaccaatagtattggtg
ttgacaccaactcgtgagttggcaatgcaaatccaaaacgaatgtgacaagtttggtagc
agctccaagatcaagaactgctgtatctatggtggtgtaccaaagtaccaacaagcccaa
gctcttcgttcgggtgtcgagattgttgttgccactccaggtcgtcttatcgactttttg
gagcgaggtggaaccaatcttcgtcgtgtcacctatttggtgttggatgaagccgatcgt
atgttggatatgggtttcgaagatcaaattcgtaagatcctcggtcaaattcgtccagac
aagcaaacactcatgttttctgccacttggccaaagagtgtccaatctcttgccgccgat
ttcctcgtcgacccaattcaagttaaaattggtagtgccgaactctctgccaatcataaa
gttactcaacacattgaaatttgtgaaaaaatggataaacaaacaaagttattccaatat
ttgaaatcaattgaaccaggagctaaatgtattattttcctcgaaacaaagagtggtgta
ggaatgttggcaagaaacatgtcatacgccggtttcaaatgcgaagctattcatggagac
aagactcaaggtgaaagagattttgcgctatctcaattcaaggatggtaaaatccaatgt
ctcattgcaactgatgttgcctctcgtggtttggatgtcaaggatataaagtatgtaatc
aactatgatttccccaacaccattgaatcatacattcatcgtattggtagaactggtcgt
gcaggtgccactggtaccgcctataccttgttcaccttggacgatatgcgtttggcttca
gatttggtaacagtcttggcagaagccagccaatatgtcccacctcaattagaacaaatg
gttccaaacaaattcaagagtattactgattacaagagtcagaatcgttacaatccatac
agaagaaataatggacaataa
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