Cavenderia fasciculata (cellular slime mold): DFA_06354
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Entry
DFA_06354 CDS
T02668
Symbol
thoc1
Name
(RefSeq) putative THO1 protein
KO
K12878
THO complex subunit 1
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03013
Nucleocytoplasmic transport
dfa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DFA_06354 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
DFA_06354 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_06354 (thoc1)
03041 Spliceosome [BR:
dfa03041
]
DFA_06354 (thoc1)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
DFA_06354 (thoc1)
Spliceosome [BR:
dfa03041
]
Complex C
Other components
EJC/TREX
DFA_06354 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
DFA_06354 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
BUD22
DUF4407
Motif
Other DBs
NCBI-GeneID:
14876313
NCBI-ProteinID:
XP_004362058
UniProt:
F4PKT3
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
MMLDVKSIFSNLLQDALNEKNINIDNVKTSLQPIIATDVIQTTPSTQSGSSTSTSGSVLS
MIAPDLRTNIELSIRQLFSDVFRSKSMKKDDINITLQLAIEIADLGYIDSYLIAQLAEDL
FDSKSISESIEFFSLLESRADYFSQDQFMVSRTKNMLLKICIDLLKRLSKSTNPDSCGRI
LIFLAFIFPLSDPSGLNPKSLHAVHGELDLTNIMDFEETSPEGKDKDKDKYKTTIDLNFY
KQFWGLQSYFQKPFQLFNNANAVNTAALALNKDKWSHFMESIEVVLTTFATHINLDELAT
MSKSHYFTKYLTSSNLIKLQLKDSTFRRNILTQLLITFQFIEFNTIKSPNLLNDSQKQLL
TTLTNKAKKIIEQTQPNGEHFMKSLALILKRETNWLTWKMDGGCKAFGRPAAQSIVVKKR
KLRKTSTKVMMGTQELSRLWNLSSDNTESLKTEIKLNVMDYIAPMYDEMIQQEEAAKKEQ
ERLARLKAKETKKQEERDAKRKKLEQKMQEDKKEDGEEVAAAEEEEDDDDNLDFDSDDLE
DLDDPKPLLKDDQMYIWKTLRLISRKRLEAFKQPSLNELIHSIKKQSAGTSSSSTSQTSG
SSAKESSSSSPSTLSSSTPTTTTIVPPLQTNEKEKEKEKETTIQPVQDITMKD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgatgttagatgtaaaatcaatattcagtaatctacttcaagatgcattgaatgaaaag
aatataaatatagataatgtaaagacatcattacaaccaatcatagcaactgatgtaata
caaacaacaccatctactcaatctggatcaagtacaagtacaagtggtagcgtattatca
atgattgcacctgacctaagaacaaatattgaattatcaattagacaattattcagtgat
gtatttagatcaaaatcaatgaaaaaggatgatatcaatataacattacaacttgcaatt
gaaattgctgatttgggttatattgattcctatttaatcgctcaattggcagaagatcta
tttgatagtaaaagtataagtgaatcaatcgaattcttttcattattggaatcaagagct
gattatttctctcaagatcaatttatggtttcaagaacaaaaaatatgttgttaaagatt
tgtattgatttgttaaagagattgagtaaatcaaccaatccagattcatgtggacgtatt
cttatatttttggcatttatctttccattgtctgatccatctggtttaaatccaaagagt
ttacatgctgttcatggtgaattggatttaacaaatattatggattttgaagaaacttct
cctgaaggtaaagataaagataaagataaatataaaacaacaattgatttaaatttctat
aaacaattttggggattacaatcatatttccaaaaaccattccaattatttaataatgca
aatgcagtcaatacagcagcactggcattaaacaaagacaagtggagtcattttatggaa
tcgatagaggttgtattgaccacctttgcaacacacattaatctcgacgaactggcaacc
atgtcaaagtctcactactttaccaaatatctcactagtagcaacctcatcaaattgcaa
ctcaaagattcaacctttagacgaaacatcctaactcaattattgatcacttttcaattt
attgaatttaatactattaaatctccaaatttattaaatgattctcaaaaacaattatta
acaacattgacaaacaaagcaaagaaaataattgaacagacacaaccaaatggagaacat
tttatgaagagtttggcattgattttaaagagagagacaaattggttgacttggaagatg
gatggtggatgcaaggcgtttggaaggcccgccgcacaatcaatcgttgtcaagaagcgt
aaactgagaaagacatcgaccaaggtaatgatgggtacgcaggaattgtcgcgtttgtgg
aacttgtcgagtgacaataccgagagtttaaagacagagatcaagctcaacgtgatggat
tatattgcaccaatgtacgacgagatgatacagcaagaggaagcagccaaaaaagagcag
gagcgtttggcaagactcaaagcaaaagagactaaaaagcaagaggaacgtgatgccaaa
cgtaaaaaactcgagcaaaagatgcaagaagataaaaaggaagatggagaagaagttgct
gcagcagaagaagaagaggatgatgacgataatttagactttgattccgacgatcttgag
gatctcgatgatcccaaaccattgttaaaggacgatcaaatgtacatatggaaaacactc
agactcatatcaagaaagagattagaggcattcaaacaaccatcactcaacgagttgatt
cattccattaaaaaacaatctgctggtacatcttcatcatcaacgagtcagacatcaggg
tcttcagccaaagaatcatcttcatcatcaccttctactttatcctcttcaactccaaca
acaacaacaatcgtaccacctttacaaacaaatgaaaaggaaaaggaaaaggaaaaagaa
acaacaatacaaccagtacaagatattacaatgaaggattaa
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integrated database retrieval system
