KEGG   Dehalogenimonas formicexedens: Dform_00676Help
Entry
Dform_00676       CDS       T04654                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase LigD
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dfo  Dehalogenimonas formicexedens
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dfo00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Dform_00676 (ligD)
Enzymes [BR:dfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Dform_00676 (ligD)
DNA repair and recombination proteins [BR:dfo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Dform_00676 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(632493..633455)
Genome map
AA seq 320 aa AA seqDB search
MPERLAPMLATLTEKPFTDPDWYFEPKLDGYRIVVFVRNGESRLQSRHFQDYTGHFPSIA
KEMSQQPVKEAIFDGELVALDENGKPCFQCLQQHLIQQRENIVSGYLVLYYAFDLLYLDG
FDLTALAQSERAGLLKTALRPGKSVKAISRFEGDGAEIFKAAIEAGFEGIIAKRRDAPYQ
EGKRSNDWLKIKGTLADEFIIAGYTSGQGARSGAFGSLVLAQYDDNKRLAHAGNVGTGFD
ERLLEDLKAKMDKLTTGKSPFDARIPFENKTTWLKPELVAEVKYAERTRDGILRHPVFLR
LRDDKPATDVKAQKILRSEK
NT seq 963 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaacggctggcgccgatgctggcgactctgacggagaaaccgtttaccgatccg
gattggtatttcgagcctaaactcgacgggtacaggatcgtggtgtttgtccgtaatggc
gaatccaggctccaatcccggcattttcaggattacaccggtcatttcccctccattgcg
aaagaaatgtcccaacagccggtcaaggaagccattttcgacggggagctggtggcgctt
gatgaaaacggcaagccgtgcttccagtgtcttcaacaacacctgatccagcagagggaa
aatatcgtttcgggctatttggttctttattacgccttcgatcttctgtatctcgacgga
ttcgacttgacggcattagctcaatccgaacgggctggcctgttaaaaacggcgctcagg
ccgggtaagtccgttaaagctatatcaaggtttgaaggcgatggagccgaaattttcaaa
gcggctatcgaggccggattcgagggaattatcgccaagaggcgtgacgcgccctatcag
gagggcaaacggtcaaacgactggctgaagatcaaagggaccctggcagatgaatttatt
atcgccggatatacctcgggtcaaggagcgcgttcaggcgccttcggttcacttgtcctt
gctcaatacgacgataacaaacggctggcccatgcgggaaacgtgggaaccggattcgat
gaacggctcctcgaggatctgaaggcgaagatggataagctgacaaccggtaaatctcct
ttcgacgccaggattccctttgaaaacaaaaccacctggctcaaaccggaactggtcgcc
gaggtaaaatacgccgaacgcacccgtgacggcatattgcggcacccggtttttttaagg
ttgagggatgataagccggcaacggatgtaaaagctcagaaaatcctgaggtcggaaaaa
tga

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