KEGG   Dokdonella koreensis: I596_2244Help
Entry
I596_2244         CDS       T04377                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dko  Dokdonella koreensis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dko00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    I596_2244
Enzymes [BR:dko01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I596_2244
DNA repair and recombination proteins [BR:dko03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I596_2244
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
2580959..2583448
Genome map
AA seq 829 aa AA seqDB search
MGLAAYRRKRDFAATPEPAGAGGTRSGARRFVVQLHHASHRHYDFRLELDGVLKSWAVPK
GPSLDPASKRLAVEVEDHPIAYAGFAGDIPEGHYGAGHVEVFDTGTWMPSGSARAGLARG
ELKFTLHGDVLRGSWVLVRTRRQGKRQHWLLIKHDDAYAGPREADDFVDPTTDRPWPPAR
RRVIWRAHATATTAASAATVPLDRLGTAETITHAPFAPELCRSRTSAPTGDGWLHEAKWD
GYRILATVVRGTVRLWSRNGLEWTGKIPELADAVRHLGFRSARLDGEMIVLQGARASFNA
LQRRLAAASREPACYMLFDLVHADGRSLAGVPLVERKRHLAERLAARPHPLLRYSEHQVG
AGAAVFSQALAAGLEGIVSKRVDSGYSGTRSGAWVKVKARPSDEFAVVGYTEPKGSRPGI
GALLLAAPDERGRLHYVGRAGTGFDAGQLRDLRRRLAHWQVDRPPAGIERLAHADRALAH
WVAPRLIAEVEFQGYGGHGLLRQAAFKTFREDKTVNDLIDQARSPARRTGGTRAARPSRK
PAGAEAATLTSPERIVFPEAGLTKREVADYYAAIAPWLLPELAGRPLSVVRCPDGIAKAC
FFQKHAGRGWGAHVHTIRIREKDGSDDYLSVDDAAGLLDLVQMNVLEFHPWGSPAGDPDH
ASRIVFDLDPGASVAWPRVVAAAREVRRQLAAIGLASFVRTSGGKGLHVVVPVDPPAPWD
AAHRFAQGFARALASLHPDELVAVAGAKNRKGKIFVDWLRNGRGATSVASYSLRARPAAG
VAMPLSWSELGRVPGGDAFTLRSALQRVRRRRNDPWEAIAGTSQALPPV
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggggctggccgcctaccgccgcaagcgcgatttcgccgccacgcccgagccggccggg
gcgggcggcacccggtccggggcacgccgcttcgtggtccagctgcatcacgcgtcccac
cgccactacgacttccgcctcgaactggacggcgtgctcaagagctgggcggtgccgaaa
gggccgagcctggacccggcgtccaagcgactggcggtggaagtggaagaccacccgatc
gcctatgccggcttcgcaggcgacattcccgagggccactacggtgccggccatgtcgag
gtcttcgacacgggaacctggatgccttcgggcagcgcacgcgccggcctggcgcgcggc
gagctgaaattcaccctgcacggcgacgtcctgcgcggctcctgggtactggtgcgcacg
cgccggcagggcaagcggcagcactggctgctgatcaagcacgacgacgcctacgcgggc
ccgcgcgaagccgacgacttcgtcgatccgaccaccgaccggccatggccgccggcgcgc
cggcgcgtgatctggcgcgcacacgcgacggcgaccaccgcggcgtcggcggcgaccgtg
cccctcgaccgcctcggcacggccgagacgatcacccacgccccgttcgcaccggaactg
tgccggtcccgtaccagcgcgcccaccggcgatggctggctgcacgaggccaaatgggac
ggctaccgcatcctggcgaccgtcgtccgcggcacggtgcgcctgtggtcgcgcaacggc
ctggagtggaccggcaagatccccgagctcgccgacgcggttcgccacctgggcttccgc
agcgcacgcctcgacggcgagatgatcgtcctgcagggcgcgcgtgcgagcttcaatgcg
ctgcaacgacggctggccgccgcgtcgcgcgagccggcctgctacatgctgttcgacctg
gtccatgccgacgggcgctcgctggcgggcgtgcccctggtcgagcgcaagcggcacctg
gccgaacgcctcgccgcccgcccgcacccgttgctgcgctattccgagcaccaggtcggc
gccggcgcggccgtgttctcacaggcactcgccgccggcctggagggcatcgtcagcaag
cgtgtcgacagcggctacagcggcacgcgcagcggcgcctgggtcaaggtgaaggcgcgc
ccctccgacgagttcgccgtggtcggctataccgagccgaaaggcagccgtcccggcatc
ggggccctgctgctggccgcgcccgatgagcgaggccggcttcactacgtcggccgcgcc
ggcaccggcttcgatgccggccagttgcgcgacctgcgccggcgcctggcgcactggcag
gtcgatcggccgccggccggcatcgagcggctggcacacgcagatcgcgcgctggcgcac
tgggtcgcgccgcgcctgatcgcggaagtcgagttccagggttacggcggccacggcctg
ctgcgccaggcggccttcaagacattccgggaggacaagacagtgaacgatctgatcgac
caggcgcggtcgccggcacggcggaccggcggcacccgcgccgcgcgcccgtcgcgcaag
ccggccggcgccgaggcagcgaccctgaccagcccggagcgcatcgtgttccccgaagcc
ggactgaccaagcgcgaggtcgccgactactacgccgcgatcgcgccgtggctgctgccg
gaactggccggccggcccttgtcggtggtgcgctgcccggacggcatcgccaaggcctgc
ttcttccagaagcacgccggtcgcggctggggcgcgcacgtccatacgatccggatccgc
gagaaggacggcagcgacgactacctgagcgtcgacgacgcggccggcttgctcgacctg
gtgcagatgaacgtgctggagttccatccgtggggatcgcccgccggcgaccccgatcat
gccagccggatcgtcttcgacctcgatcccggcgcctcggtggcctggccccgcgtcgtc
gccgcggcccgcgaggtccggcggcagctggcggcgatcggcctggcctcgttcgtgcgg
acctccggcggcaagggcctgcacgtggtggtgccggtcgatccgccggccccctgggac
gccgcgcaccgcttcgcccagggcttcgcccgcgcgctggcctcgctgcatccggacgag
ctggtggccgtcgccggcgcgaagaaccgcaagggcaagatcttcgtcgactggctgcgc
aacggccgcggcgcgaccagcgtcgcctcgtactcgctgcgcgcgcgccccgcggccggc
gtcgccatgccgctgtcctggagcgagctgggccgcgttcccggcggcgacgcgttcacg
ctgcgcagcgcgctgcagcgcgtgcggcggcgccgcaacgatccctgggaggcgatcgcc
ggcacctcgcaggcgctgccgccggtctga

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