KEGG   Dehalococcoides mccartyi DCMB5: dcmb_187
Entry
dcmb_187          CDS       T02476                                 
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
dmd  Dehalococcoides mccartyi DCMB5
Pathway
dmd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dmd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    dcmb_187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmd03019]
    dcmb_187
Enzymes [BR:dmd01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     dcmb_187
Messenger RNA biogenesis [BR:dmd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     dcmb_187
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Flavi_DEAD
Other DBs
NCBI-ProteinID: AGG05818
LinkDB
Position
195422..197107
AA seq 561 aa
MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII
QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETK
SVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLSS
PIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYNRPEMAVNETSQTDTPSEMPV
SPARPFNPGFRPSRPANSAPRFHREGNFAPRMQSHSSFEGTSAPAARPAARYNDRPAFRK
ENSFQTTEASRPSFRKETGFTPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNK
VGKPPFFRRSKPAVSEKNETY
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgtctttcgaatctttcaattttgatccggctgttatggctggagtcagggcctgcggc
tataaagagcccacccccattcaggcacaggctattccccccattatggctggacatgat
gttatcggtctggctcagaccggcaccggtaaaaccgctgcttatgccttgcccattatt
caaaaaatgctttctacccccaggggacgggtgcgtactctggtaattgcacccaccagg
gaactggcttgccagatttctgatagttttcgttcacttggccagcgcgcccgtatacgg
gagtgctccatttacggcggagtgaatatggaccagcaaattcgccgcttacggagcggt
gtagacgtagtagtggcttgccccggcaggcttctggatcacatatggcggggaactatt
gatgtctgcggggtggaaaccctgataatagacgaagctgaccgcatgtttgacatgggt
ttccagccggatatccagagcattttgaagtgtctggttcagccgcatcaaaccctttta
ttttcggcaaccatgccgccggaagtccgcaagcttactctggaaactcagaccaatccg
gtaactgtacaggttggtacccagtctccggtaagcagtgtcagccatagtgtttatccg
gtgaaaagtcaccagaaaaccccgttactgcttgaaatattgaaaacggtagaaaccaag
tcagttctgatatttgcccgcaccaaatatggagcggaaaatctggctgatgaaatatcc
aaggccgggtttactacagcctcccttcagggcaatctttcccaaaaccgccgtcatgcc
gttatggaagggttccgccgcgggaatttcaaaattctggtagctaccgatattgccgcc
agaggtttggatattgaccatatatcccatgtaataaattacgatatgccggattccccg
gaagactatactcaccgtattggccggacaggacgctttgaccgcacaggacaggctttc
agtctggtaaccggacgtgacggggatatggtaagagatatccagaggcttttaagcagc
cccattcagcgtctgcgggttgacgggtttgattatgctacgacccgcaatgatggacag
aaccagtcacagcgcagggattttgcaccccgccggggttattcccatggcggttataat
cgccctgaaatggctgtaaatgaaacttcacaaacggatactccgtctgaaatgccggta
agccccgcaaggccttttaatcccggtttccggcccagccgtccggcaaattctgctccc
cgtttccacagggaggggaactttgccccccgtatgcagagccactcttcttttgagggt
acctctgccccagcggccagacctgcagcccggtataatgaccgtcctgcttttagaaaa
gaaaacagttttcaaactaccgaggcgtcacggccttcttttaggaaggaaacagggttt
actccccgtgagcatactcaggctgattttgaaaatagcgaacagccttcaggcaggcgt
cctgcccggtttaacgggaaagcttcttttgcagaccgcccggcacgttcggggaataaa
gtggggaaaccgcccttctttaggcgttcaaaaccagctgtttcagagaaaaacgaaact
tactag

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