Dehalococcoides mccartyi DCMB5: dcmb_187
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Entry
dcmb_187 CDS
T02476
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Pathway
dmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dcmb_187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmd03019
]
dcmb_187
Enzymes [BR:
dmd01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
dcmb_187
Messenger RNA biogenesis [BR:
dmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
dcmb_187
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGG05818
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All DBs
Position
195422..197107
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AA seq
561 aa
AA seq
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MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII
QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETK
SVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLSS
PIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYNRPEMAVNETSQTDTPSEMPV
SPARPFNPGFRPSRPANSAPRFHREGNFAPRMQSHSSFEGTSAPAARPAARYNDRPAFRK
ENSFQTTEASRPSFRKETGFTPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNK
VGKPPFFRRSKPAVSEKNETY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgatccggctgttatggctggagtcagggcctgcggc
tataaagagcccacccccattcaggcacaggctattccccccattatggctggacatgat
gttatcggtctggctcagaccggcaccggtaaaaccgctgcttatgccttgcccattatt
caaaaaatgctttctacccccaggggacgggtgcgtactctggtaattgcacccaccagg
gaactggcttgccagatttctgatagttttcgttcacttggccagcgcgcccgtatacgg
gagtgctccatttacggcggagtgaatatggaccagcaaattcgccgcttacggagcggt
gtagacgtagtagtggcttgccccggcaggcttctggatcacatatggcggggaactatt
gatgtctgcggggtggaaaccctgataatagacgaagctgaccgcatgtttgacatgggt
ttccagccggatatccagagcattttgaagtgtctggttcagccgcatcaaaccctttta
ttttcggcaaccatgccgccggaagtccgcaagcttactctggaaactcagaccaatccg
gtaactgtacaggttggtacccagtctccggtaagcagtgtcagccatagtgtttatccg
gtgaaaagtcaccagaaaaccccgttactgcttgaaatattgaaaacggtagaaaccaag
tcagttctgatatttgcccgcaccaaatatggagcggaaaatctggctgatgaaatatcc
aaggccgggtttactacagcctcccttcagggcaatctttcccaaaaccgccgtcatgcc
gttatggaagggttccgccgcgggaatttcaaaattctggtagctaccgatattgccgcc
agaggtttggatattgaccatatatcccatgtaataaattacgatatgccggattccccg
gaagactatactcaccgtattggccggacaggacgctttgaccgcacaggacaggctttc
agtctggtaaccggacgtgacggggatatggtaagagatatccagaggcttttaagcagc
cccattcagcgtctgcgggttgacgggtttgattatgctacgacccgcaatgatggacag
aaccagtcacagcgcagggattttgcaccccgccggggttattcccatggcggttataat
cgccctgaaatggctgtaaatgaaacttcacaaacggatactccgtctgaaatgccggta
agccccgcaaggccttttaatcccggtttccggcccagccgtccggcaaattctgctccc
cgtttccacagggaggggaactttgccccccgtatgcagagccactcttcttttgagggt
acctctgccccagcggccagacctgcagcccggtataatgaccgtcctgcttttagaaaa
gaaaacagttttcaaactaccgaggcgtcacggccttcttttaggaaggaaacagggttt
actccccgtgagcatactcaggctgattttgaaaatagcgaacagccttcaggcaggcgt
cctgcccggtttaacgggaaagcttcttttgcagaccgcccggcacgttcggggaataaa
gtggggaaaccgcccttctttaggcgttcaaaaccagctgtttcagagaaaaacgaaact
tactag
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