Dehalococcoides mccartyi DCMB5: dcmb_685
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Entry
dcmb_685 CDS
T02476
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dmd
Dehalococcoides mccartyi DCMB5
Brite
KEGG Orthology (KO) [BR:
dmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmd03032
]
dcmb_685 (topA)
03400 DNA repair and recombination proteins [BR:
dmd03400
]
dcmb_685 (topA)
Enzymes [BR:
dmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
dcmb_685 (topA)
DNA replication proteins [BR:
dmd03032
]
Prokaryotic type
DNA Topoisomerases
dcmb_685 (topA)
DNA repair and recombination proteins [BR:
dmd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
dcmb_685 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
zf-C4_Topoisom
zf-ribbon_3
zinc_ribbon_9
Toprim_4
DUF2207_C
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AGG06312
UniProt:
A0AA86DPI4
LinkDB
All DBs
Position
complement(674066..676177)
Genome browser
AA seq
703 aa
AA seq
DB search
MKEKLVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENNFTPKYVSLKAK
AKVIKELKEAVKNSKAIYLATDPDREGEAIAWHISEVTKANLSNPKRVVFHEITKEAIDK
AFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRER
EIEKFVSTEYWNIEALLSKKVKSAAFKATLAGYVTKGKLEIHNESEADQIKKELEVSDYQ
VLKIKRKSNLRQSPAPFITSTLQQEAWRKLRFSAKQTMVIAQQLYEGLNVEGEGEVGLIT
YMRTDSTNVARTAVAETRDYITEKYGPAYLPKQARVFSSKVKGAQEAHEAIRPTRINRTP
DFIKKSLSADQFKLYQLIWQRMMASQMSPAVFDNTTIDIEAKHQPSKTRYLLRTTSSVNT
FPGFTIVYIEGKDEDEEKEQSSLPPMEEGEELKLKSLDATQHFTQPPPRYTEATLIKALE
QNGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDLLVEHFPDIIGIDFTAAME
AELDKIATEKLDWVPIIRRFYEPFIKEIEAASEKIEKIKPPEEELDELCPECNAKLVIKR
GRFGKFIACSRYSKEDDGCRYTRSYQIKTGAKCPDCNSDIVEKYSKKGKIFYGCAGYPNC
KFVSFYKPLTKPCPECGALMTKSGQNWAKCTKCGKRKKLEDES
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaacttgttatagttgagtcacctgccaaagcccgtactatcagcaaaatg
ctgggtaaggactttaatattatggccaccatggggcatatacgggatttgcctaaaagt
acgctgggcgtagatgttgaaaacaattttacccccaaatatgtttccctgaaggctaag
gccaaggttataaaggaacttaaggaagcagtcaagaattccaaggcaatatatctggct
accgaccctgaccgcgaaggtgaggccattgcctggcatatatccgaagtcaccaaagcc
aatctatccaaccctaaacgggtggtgtttcacgaaattaccaaagaagccatagacaag
gctttcaaaaatacccgtgaactggatatggatctggtaaatgcccagcaagcccgccgg
gtgcttgaccggctggtgggttacaaactaagccccctgctctggcgaaaggttcaaagg
ggactttcagccggacgggtacaatctgtctccctgaaaataatagttgaccgtgaacgg
gaaatagagaagtttgtatctactgaatactggaacatagaggccttgctgagtaaaaaa
gtaaaatcagccgccttcaaagccactctggccggttatgtaaccaaaggcaaactggaa
atacataacgaatctgaagctgaccaaatcaaaaaagagcttgaggtatctgactatcag
gtactaaaaataaaaagaaaatcaaacctcagacaatctcctgcaccctttattaccagc
actctccagcaggaagcctggcggaaactccgtttttcagccaagcaaaccatggtcata
gcccagcaactgtatgaaggcctgaacgtagagggtgaaggagaagtgggtcttatcacc
tatatgcgtactgactctaccaatgtggcacgaactgctgtagccgaaacccgtgattat
ataactgaaaaatacggccctgcctacctgcccaaacaggccagagtattctcaagcaaa
gttaagggagcacaggaagcccatgaagctatccgccctacccgtataaatcgcacacct
gattttatcaagaagagtttgtcggcagaccagttcaagctttaccagcttatctggcag
cgcatgatggccagccagatgagccctgccgtctttgacaatacaactatagatatagag
gccaagcaccagccatcaaaaacccgctatctgcttaggactaccagctcggtaaatact
ttcccgggttttactattgtgtatatagagggcaaggacgaggacgaggaaaaagaacaa
tccagcctgccccccatggaagaaggcgaagaactgaagctgaaaagtctggatgctacc
cagcactttacccaaccgcctccccgttataccgaagctacactaatcaaggcgctggaa
cagaacggtatcggacgccccagcacttatgctcccactatttccaccatacaggaacgg
gaatatattaccaagcttaaaggcagcctgaagcccagtgaactggggatgctggtaaat
gacctgctggtagagcatttccctgatattatcggcatagattttaccgccgccatggaa
gccgaactggataaaatagctaccgaaaaactggattgggtgcccattatacggcgtttc
tacgaaccatttataaaagaaatagaagccgccagtgaaaaaattgagaaaattaagcca
cctgaagaagaactggacgaactttgccctgaatgtaatgccaaactggtcatcaaacgg
ggacgcttcggcaaatttattgcctgctcacgttattccaaggaagatgacggctgccgt
tacacccgctcataccagataaaaacaggtgccaaatgccccgactgcaattcggatata
gttgagaaatacagcaaaaagggcaagatattttacggctgtgccggttacccgaactgc
aaatttgtatctttctacaagcccttgaccaaaccttgcccggaatgcggcgcgcttatg
accaagagcggccagaactgggcaaaatgcaccaagtgcggtaaacgcaaaaaacttgaa
gatgaaagctaa
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