Drosophila melanogaster (fruit fly): Dmel_CG1119
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Entry
Dmel_CG1119 CDS
T00030
Symbol
Gnf1
Name
(RefSeq) germ line transcription factor 1, isoform A
KO
K10754
replication factor C subunit 1
Organism
dme
Drosophila melanogaster (fruit fly)
Pathway
dme03030
DNA replication
dme03410
Base excision repair
dme03420
Nucleotide excision repair
dme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dmel_CG1119 (Gnf1)
03410 Base excision repair
Dmel_CG1119 (Gnf1)
03420 Nucleotide excision repair
Dmel_CG1119 (Gnf1)
03430 Mismatch repair
Dmel_CG1119 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dme03032
]
Dmel_CG1119 (Gnf1)
03400 DNA repair and recombination proteins [BR:
dme03400
]
Dmel_CG1119 (Gnf1)
DNA replication proteins [BR:
dme03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Dmel_CG1119 (Gnf1)
DNA repair and recombination proteins [BR:
dme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Dmel_CG1119 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_22
BRCT_2
DNA_pol3_delta
AAA_30
AAA_14
PTCB-BRCT
RuvB_N
Rad17
DUF4298
AAA_17
nSTAND3
AAA_33
AAA_18
AAA_5
IstB_IS21
AAA_16
Motif
Other DBs
NCBI-GeneID:
40607
NCBI-ProteinID:
NP_524229
FlyBase:
FBgn0004913
UniProt:
P35600
LinkDB
All DBs
Position
3R
Genome browser
AA seq
986 aa
AA seq
DB search
MQRGIDSFFKRLPAKAKSAEAENGETPSKAPKRRKAVIISSDEDEVVSPPETKKRKASKT
ASSEDDVVAATPEPIAKKARNGQKPALSKLKRHVDPTELFGGETKRVIVPKPKTKAVLEF
ENEDIDRSLMEVDLDESIKEAAPEKKVHSITRSSPSPKRAKNSSPEPPKPKSTKSKATTP
RVKKEKPAADLESSVLTDEERHERKRASAVLYQKYKNRSSCLNPGSKEIPKGSPDCLSGL
TFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLAVAEELNIPIL
SEDGLFDLIREKSGIAKQVKEEKKSPKKEHSSEEKGKKEVKTSRRSSDKKEKEATKLKYG
EKHDIAKHKVKEEHTSPKETKDKLNDVPAVTLKVKKEPSSQKEHPPSPRTADLKTLDVVG
MAWVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFY
KAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFT
GQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNHPKIRSLVN
YCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKE
DASQKSGQQVATKDLKLGPWEVVRKVFTADEHKHMSFADKSDLFFHDYSLAPLFVQQNYL
QVLPQGNKKDVLAKVAATADALSLGDLVEKRIRANSAWSLLPTQAFFSSVLPGEHMCGHF
TGQINFPGWLGKNSKSGKRARLAQELHDHTRVCTSGSRLSVRLDYAPFLLDNIVRPLAKD
GQEGVPAALDVMKDYHLLREDLDSLVELTSWPGKKSPLDAVDGRVKAALTRSYNKEVMAY
SYSAQAGIKKKKSEAAGADDDYLDEGPGEEDGAGGHLSSEEDEDKDNLELDSLIKAKKRT
TTSKASGGSKKATSSTASKSKAKAKK
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgcggcattgactcctttttcaaacggctgccggccaaggcgaaaagtgccgag
gccgaaaatggagagacgccgtcgaaggcgccaaaacgcaggaaagccgtgataatttcc
agcgacgaggacgaggtggtcagtccgccggagaccaagaaacgcaaggcttcgaagaca
gcatccagcgaggatgatgtggtggccgccacaccggaaccgattgcgaagaaggccagg
aacgggcagaaaccagcgctctccaagcttaagcggcacgtagatcctacggagcttttc
ggtggagaaaccaaacgggtgattgtgcccaagccgaagaccaaagctgttctcgagttc
gagaacgaagacattgaccggagtttaatggaagttgatctggacgagagtatcaaagag
gctgcccccgaaaaaaaggttcactcgataaccaggagctctccctcgcctaaaagagca
aagaacagcagcccggaaccgccaaaacccaagtcaacaaaatccaaagccaccactccg
cgtgtgaagaaggagaaacctgcggcagatctagaatccagtgtcctaacagacgaggaa
cgccacgagcgtaaacgtgcttccgccgtgctctaccagaagtacaaaaaccgcagttcg
tgcctgaaccccggcagcaaagaaattccaaagggatccccggattgtctgagtggctta
acctttgtcgtaaccggagtcctcgagtccatggaacgagaggaggcggagtccgtgatc
aaggagtatggcggaaaggtgatgaccgtggttggaaagaaactcaagtatctggtcgta
ggagaagaggctggaccaaagaaattagctgtggctgaggaactcaatatacccattctc
agcgaggacgggctcttcgatctaatcagggagaaatcaggaatcgctaagcaggtaaag
gaagagaagaaaagcccgaagaaggagcacagctccgaggagaaagggaaaaaggaagtc
aagacttctagaaggtccagtgataaaaaggagaaggaagccactaaactgaaatatggc
gagaagcatgatatcgccaaacataaagtcaaggaagaacacacttccccgaaggagacg
aaggataagcttaatgatgtaccagctgttaccttgaaagtaaaaaaagagcccagctcc
cagaaagaacaccctccgtcgccaagaactgccgatctgaagactctggatgtggtcggg
atggcctgggtggacaagcacaagcctacgagcataaaagaaatcgttggccaggcagga
gccgccagcaacgtgaccaagctgatgaactggttgtccaagtggtatgttaaccatgat
ggaaacaagaagccccaacggcccaatccttgggccaagaacgacgacggcagcttctac
aaggcggccctactttcgggaccccctggaataggaaagaccacgacggcgactctggta
gtgaaggagcttggcttcgatgcggtggagttcaacgcctccgacacacgcagcaaacgc
ttgctcaaggatgaagtgtccacgctgctgagcaacaaatccctctccggttactttaca
gggcaaggccaagcggtctcccgcaagcatgtgctcataatggacgaagttgatggcatg
gccggtaacgaggaccgtggtggaatgcaggagctgattgccttgatcaaggatagctct
attccaattatttgcatgtgtaatgatcgcaaccatccaaaaattcgatccctggttaac
tattgctacgatctgcgatttcagaggcctcgcctcgagcaaatcaaagggaaaataatg
agcatctgctttaaggaaaaagtaaagatatcaccggccaaagtggaagaaatcatagcg
gctaccaacaacgatattcggcaatccattaaccacattgccctgctgagcgccaaggaa
gacgcttcccaaaagtcagggcagcaggttgccaccaaggatctgaagctgggaccctgg
gaggtggtgcgaaaagtcttcaccgcggacgagcacaaacacatgtcttttgccgacaag
agcgaccttttctttcacgactacagcctggccccgctctttgtgcagcaaaactatctg
caggtcctaccacagggaaacaaaaaggatgtcctggcaaaggtggcagctacggcagat
gccctaagcttgggtgaccttgttgaaaagcgtattcgtgcgaattctgcttggagtctt
ctacccactcaggcctttttcagctcggtccttcctggcgagcacatgtgtggccacttc
actggacagattaactttcccgggtggctgggcaagaattccaagtctggaaaacgtgcc
aggctggcccaggagctgcatgatcatactagggtctgcacctcgggctcaaggctatca
gtgaggctggattacgcccccttccttctggataatattgtgcgacctcttgcaaaggat
gggcaggagggtgtgcccgctgctttagacgttatgaaggattaccatctactccgtgag
gatctggactcgctggtcgagcttacatcctggcccggcaagaaatccccactggacgca
gtggatgggagagtaaaagccgctttaacgcgatcctacaacaaggaggttatggcatac
tcctattccgctcaagcaggcatcaaaaagaagaaatcagaggctgctggagcggatgac
gattacttggacgagggtccgggcgaagaggacggagctggtggccacttatcatcagag
gaagacgaggacaaggacaacctagagctggatagtttgatcaaagccaaaaagaggaca
actacgtcaaaagcgtctggtggatccaaaaaggctacatcttccacggcttcaaagtct
aaggccaaggccaaaaagtga
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