Dokdonia sp. MED134: MED134_08956
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Entry
MED134_08956 CDS
T03275
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dok
Dokdonia sp. MED134
Pathway
dok03410
Base excision repair
dok03430
Mismatch repair
dok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MED134_08956 (recJ)
03430 Mismatch repair
MED134_08956 (recJ)
03440 Homologous recombination
MED134_08956 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dok03400
]
MED134_08956 (recJ)
DNA repair and recombination proteins [BR:
dok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MED134_08956 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MED134_08956 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MED134_08956 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glu_syn_central
Motif
Other DBs
NCBI-ProteinID:
EAQ39608
LinkDB
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Position
complement(2016900..2018591)
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AA seq
563 aa
AA seq
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MRWTLKPKPEAQKVAKLAQELGVEAPIATLLIQRDIDTYEKAKNFFRPSLDALHDPFLMK
DMDKAVARIEQAIAQGENILVFGDYDVDGTTSVALMSSYLDTIHPQVATYIPDRYAEGYG
VSYMGIDFAADNDMTLIIALDCGVKAIEKVAYAKEKGIDFIICDHHRPGDQLPDAVAILD
PKREDCPYPYDELCGCGVGFKLISAIALSRKQNFEELLPYLDLVATAIGADIVPITGENR
ILAYHGLNVINQAPRAGFEAIIKQVKKETLTITDVVFIIGPRINAAGRMVHGNHAVTLLR
ETDLATATKFASEIEQYNSDRKEADKSITQQALDQIIENQEEGNKTTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTRSGDKYAASARSVKGFDVYNALHECAEHIEQFGGHKYAAGLT
LLPEQYEAFKAKFEEVVAASCDERLLVPEISIDSEINLADITPKFHRIIKQFAPFGPRNM
SPTFMTKNLTDTGYGKKVGADQTHLKAAVVQNSRGSQIGCIGFNLGDKYDLITNKKPFMA
AYAIDENEWNGNVSLQLRLKDIK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggactttaaaaccaaaaccagaggcacaaaaagtagcaaaactagcacaagag
ctgggagtagaagctcctattgcaacactcctcatacagcgagatattgacacgtatgag
aaagcaaaaaacttttttagaccctcactagatgctttgcacgatccattcttgatgaaa
gatatggataaagctgtagcacgtatagagcaggcaatagctcaaggcgaaaacatccta
gtatttggtgattatgatgtagatggtaccacgagtgttgccttgatgagttcttatctc
gataccattcacccgcaggtggcaacctatattccagatcgctatgcagagggttatggt
gtttcttatatgggaatagactttgctgcagataatgatatgacactcattattgcatta
gattgtggtgtaaaagcgattgagaaagtggcttatgcaaaagaaaaaggaatcgacttt
attatttgtgatcaccacagacccggtgatcagctgccggatgcggttgctattttagac
ccaaaaagagaagattgcccgtatccttatgatgagttatgtgggtgtggtgtaggtttt
aaacttataagtgcaattgcgctttcgcgaaagcaaaattttgaagagcttcttccttac
ctagatcttgttgccaccgcaataggcgcagatattgttcctattacaggagaaaacaga
atacttgcctatcacgggcttaatgtgataaaccaagcacctcgagcaggttttgaagcc
attataaagcaagtcaaaaaggaaacccttaccatcacagatgttgtttttatcataggc
ccacgtataaatgccgcgggaagaatggtgcacggtaaccacgcggtgaccttattacga
gagacagatctagcgacagcaaccaagttcgcatcagagatagagcaatataactcagat
cgaaaggaagcagataagagtattactcagcaagccttagatcaaattatagagaatcaa
gaggagggaaataaaaccaccgttgtttttcaagaggactggcataaaggggtgataggg
attgtggcttctagacttattgaaacatattacaggcctacgcttgtttttacaagaagt
ggtgataagtatgcagcctctgcgagatctgtaaaaggttttgatgtatataacgcccta
cacgagtgtgcggagcatatagaacagtttggtggacataaatatgctgcaggactcact
ttgttaccagagcaatatgaggcttttaaagcaaagtttgaggaggtggttgccgctagt
tgtgatgagcgcttgctagtgccagaaatttctatagatagtgagataaacctcgcagat
attacacctaagtttcaccgtattataaagcagtttgcgccgtttgggccacgtaatatg
tcacctacgtttatgactaaaaacttgacagatactggttatggtaaaaaagtaggggca
gatcaaacacatcttaaagcggctgttgttcaaaacagcagaggttcacagatagggtgt
ataggttttaatctaggcgataagtatgatttaattacaaataaaaagccatttatggca
gcctacgccatagatgaaaatgagtggaatggtaatgtaagcctccagcttagactaaaa
gatattaagtaa
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