KEGG   Dokdonia sp. MED134: MED134_08956
Entry
MED134_08956      CDS       T03275                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dok  Dokdonia sp. MED134
Pathway
dok03410  Base excision repair
dok03430  Mismatch repair
dok03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dok00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    MED134_08956 (recJ)
   03430 Mismatch repair
    MED134_08956 (recJ)
   03440 Homologous recombination
    MED134_08956 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dok03400]
    MED134_08956 (recJ)
DNA repair and recombination proteins [BR:dok03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     MED134_08956 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     MED134_08956 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MED134_08956 (recJ)
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Glu_syn_central
Other DBs
NCBI-ProteinID: EAQ39608
LinkDB
Position
complement(2016900..2018591)
AA seq 563 aa
MRWTLKPKPEAQKVAKLAQELGVEAPIATLLIQRDIDTYEKAKNFFRPSLDALHDPFLMK
DMDKAVARIEQAIAQGENILVFGDYDVDGTTSVALMSSYLDTIHPQVATYIPDRYAEGYG
VSYMGIDFAADNDMTLIIALDCGVKAIEKVAYAKEKGIDFIICDHHRPGDQLPDAVAILD
PKREDCPYPYDELCGCGVGFKLISAIALSRKQNFEELLPYLDLVATAIGADIVPITGENR
ILAYHGLNVINQAPRAGFEAIIKQVKKETLTITDVVFIIGPRINAAGRMVHGNHAVTLLR
ETDLATATKFASEIEQYNSDRKEADKSITQQALDQIIENQEEGNKTTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTRSGDKYAASARSVKGFDVYNALHECAEHIEQFGGHKYAAGLT
LLPEQYEAFKAKFEEVVAASCDERLLVPEISIDSEINLADITPKFHRIIKQFAPFGPRNM
SPTFMTKNLTDTGYGKKVGADQTHLKAAVVQNSRGSQIGCIGFNLGDKYDLITNKKPFMA
AYAIDENEWNGNVSLQLRLKDIK
NT seq 1692 nt   +upstreamnt  +downstreamnt
atgcgctggactttaaaaccaaaaccagaggcacaaaaagtagcaaaactagcacaagag
ctgggagtagaagctcctattgcaacactcctcatacagcgagatattgacacgtatgag
aaagcaaaaaacttttttagaccctcactagatgctttgcacgatccattcttgatgaaa
gatatggataaagctgtagcacgtatagagcaggcaatagctcaaggcgaaaacatccta
gtatttggtgattatgatgtagatggtaccacgagtgttgccttgatgagttcttatctc
gataccattcacccgcaggtggcaacctatattccagatcgctatgcagagggttatggt
gtttcttatatgggaatagactttgctgcagataatgatatgacactcattattgcatta
gattgtggtgtaaaagcgattgagaaagtggcttatgcaaaagaaaaaggaatcgacttt
attatttgtgatcaccacagacccggtgatcagctgccggatgcggttgctattttagac
ccaaaaagagaagattgcccgtatccttatgatgagttatgtgggtgtggtgtaggtttt
aaacttataagtgcaattgcgctttcgcgaaagcaaaattttgaagagcttcttccttac
ctagatcttgttgccaccgcaataggcgcagatattgttcctattacaggagaaaacaga
atacttgcctatcacgggcttaatgtgataaaccaagcacctcgagcaggttttgaagcc
attataaagcaagtcaaaaaggaaacccttaccatcacagatgttgtttttatcataggc
ccacgtataaatgccgcgggaagaatggtgcacggtaaccacgcggtgaccttattacga
gagacagatctagcgacagcaaccaagttcgcatcagagatagagcaatataactcagat
cgaaaggaagcagataagagtattactcagcaagccttagatcaaattatagagaatcaa
gaggagggaaataaaaccaccgttgtttttcaagaggactggcataaaggggtgataggg
attgtggcttctagacttattgaaacatattacaggcctacgcttgtttttacaagaagt
ggtgataagtatgcagcctctgcgagatctgtaaaaggttttgatgtatataacgcccta
cacgagtgtgcggagcatatagaacagtttggtggacataaatatgctgcaggactcact
ttgttaccagagcaatatgaggcttttaaagcaaagtttgaggaggtggttgccgctagt
tgtgatgagcgcttgctagtgccagaaatttctatagatagtgagataaacctcgcagat
attacacctaagtttcaccgtattataaagcagtttgcgccgtttgggccacgtaatatg
tcacctacgtttatgactaaaaacttgacagatactggttatggtaaaaaagtaggggca
gatcaaacacatcttaaagcggctgttgttcaaaacagcagaggttcacagatagggtgt
ataggttttaatctaggcgataagtatgatttaattacaaataaaaagccatttatggca
gcctacgccatagatgaaaatgagtggaatggtaatgtaagcctccagcttagactaaaa
gatattaagtaa

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